CAZyme3D

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Entry ID

Information for CAZyme ID: CAR36312.1

Basic Information

GenBank IDCAR36312.1
FamilyCBM34, GH13_21
Sequence Length605
UniProt IDB5R6Q3(100,100)Download
Average pLDDT?91.79
CAZy50 ID45846
CAZy50 RepNo, AMO50316.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID550538
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLNAWHLPVA  PFVKQHNDKL  TITLWLSGEN  PPSRVTLRSE  FDNEEISLAM  RKQRRQPQPG60
VTAWRATLNI  ALGQPRRRYS  FKLLWHDRQL  WFTPQGFSCF  PPARLEQFAV  DVPDSGPQWV120
ADQIFYQIFP  DRFARSQSRE  AGQDKVYYHH  AAGHDIVRKE  WDEPLTPQAG  GSTFYGGCLN180
GICEKLPYLK  KLGVTALYLN  PVFTAPSVHK  YDTEDYRHVD  PQFGGDRALL  RLRRETQAQG240
MRLVLDGVFN  HSGDSHAWFD  RHNRSTGGAC  HHPDSPWRDW  YSFSPQGVAL  DWLGYPSLPK300
LDYQSETLVD  EIYRGEDSIV  RHWLKAPWNM  DGWRLDVVHM  LGEAGGARHN  LQHVAGITRA360
AKEAQPEAYI  VGEHFGDARQ  WLQADAEDAA  MNYRGFTFPL  WGFLANTDIA  YEPQHIDART420
CIAWMDNYRA  GLSHQQQLRM  FNQLDSHDTA  RFKTLLGKDA  ARLPLAVVWL  FTWPGVPCIY480
YGDEVGVDGA  NDPMCRKPFP  WDERKQDGNL  LALYQRMAKL  RQSSLALRRG  GCQALYAEGD540
VVVFVRVYQQ  QRALVAINRG  EACEVALEAL  PLLNVAGWQC  KTGSGDIREG  RLSLPAISAT600
VWMNR605

Predicted 3D structure by AlphaFold2 with pLDDT = 91.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(5-114)+GH13_21(177-490)

MLNAWHLPVA  PFVKQHNDKL  TITLWLSGEN  PPSRVTLRSE  FDNEEISLAM  RKQRRQPQPG60
VTAWRATLNI  ALGQPRRRYS  FKLLWHDRQL  WFTPQGFSCF  PPARLEQFAV  DVPDSGPQWV120
ADQIFYQIFP  DRFARSQSRE  AGQDKVYYHH  AAGHDIVRKE  WDEPLTPQAG  GSTFYGGCLN180
GICEKLPYLK  KLGVTALYLN  PVFTAPSVHK  YDTEDYRHVD  PQFGGDRALL  RLRRETQAQG240
MRLVLDGVFN  HSGDSHAWFD  RHNRSTGGAC  HHPDSPWRDW  YSFSPQGVAL  DWLGYPSLPK300
LDYQSETLVD  EIYRGEDSIV  RHWLKAPWNM  DGWRLDVVHM  LGEAGGARHN  LQHVAGITRA360
AKEAQPEAYI  VGEHFGDARQ  WLQADAEDAA  MNYRGFTFPL  WGFLANTDIA  YEPQHIDART420
CIAWMDNYRA  GLSHQQQLRM  FNQLDSHDTA  RFKTLLGKDA  ARLPLAVVWL  FTWPGVPCIY480
YGDEVGVDGA  NDPMCRKPFP  WDERKQDGNL  LALYQRMAKL  RQSSLALRRG  GCQALYAEGD540
VVVFVRVYQQ  QRALVAINRG  EACEVALEAL  PLLNVAGWQC  KTGSGDIREG  RLSLPAISAT600
VWMNR605

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help