CAZyme3D

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Entry ID

Information for CAZyme ID: CAN80632.1

Basic Information

GenBank IDCAN80632.1
FamilyGT13
Sequence Length228
UniProt IDA5AZR9(100,100)Download
Average pLDDT?93.20
CAZy50 ID17234
CAZy50 RepNo, VDC69238.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID29760
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderVitales
FamilyVitaceae
GenusVitis
SpeciesVitis vinifera

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEIAPDFFDY  FEAAAALLDN  DKSIMAVSSW  NDNGQKQFVH  DPYTLYRSDF  FPGLGWMLSK60
SIWDELSPKW  PKAYPLWLKE  NHKGRQFIRP  EVCRTYNFGE  HGSSFGQFFK  QYLEPIKLND120
VRVDWKSIDL  SFLREDKYPR  HFADMVKNAK  PVYGADVVLK  AYNIDGDVRI  QYRDQADFER180
IARQFGIFEE  WKDGIPRTAY  KGVVVFRYQT  PRRIFLVASD  SLRWLGID228

Predicted 3D structure by AlphaFold2 with pLDDT = 93.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT13(1-222)

MEIAPDFFDY  FEAAAALLDN  DKSIMAVSSW  NDNGQKQFVH  DPYTLYRSDF  FPGLGWMLSK60
SIWDELSPKW  PKAYPLWLKE  NHKGRQFIRP  EVCRTYNFGE  HGSSFGQFFK  QYLEPIKLND120
VRVDWKSIDL  SFLREDKYPR  HFADMVKNAK  PVYGADVVLK  AYNIDGDVRI  QYRDQADFER180
IARQFGIFEE  WKDGIPRTAY  KGVVVFRYQT  PRRIFLVASD  SLRWLGID228

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help