CAZyme3D

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Entry ID

Information for CAZyme ID: CAM36559.2

Basic Information

GenBank IDCAM36559.2
FamilyCBM48
Sequence Length278
UniProt IDA4HCR3(100,100)Download
Average pLDDT?70.26
CAZy50 ID137797
CAZy50 RepNo, CAM68155.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID420245
KingdomEukaryota
PhylumEuglenozoa
ClassKinetoplastea
OrderTrypanosomatida
FamilyTrypanosomatidae
GenusLeishmania
SpeciesLeishmania braziliensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRSSLPRPP  MDPDSTAGGM  TGNVPAITFP  IVLRYQDQDV  RALIEARKSV  YVAVEAMSWK60
PLPMTPSTDS  FYALLELPPG  NHNYRFLVNG  MEVVDSTQPL  APGTASPNMP  VPPQAPSLPV120
GLAVTQPLPK  PVAARDGKPA  NTIFLNDVLL  TTKEDDDIMD  NGEGWGQEPI  MFEESRKYPP180
IVPLHLRYTP  LNTPPTLVRC  SRDGRMAVMD  TGGEHNSRVP  PEHLPLPLSV  TINHVYFQRR240
EDHAVMGVTT  RYCNKYTTVV  YYSHLPANPI  DSLESLKT278

Predicted 3D structure by AlphaFold2 with pLDDT = 70.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MSRSSLPRPP  MDPDSTAGGM  TGNVPAITFP  IVLRYQDQDV  RALIEARKSV  YVAVEAMSWK60
PLPMTPSTDS  FYALLELPPG  NHNYRFLVNG  MEVVDSTQPL  APGTASPNMP  VPPQAPSLPV120
GLAVTQPLPK  PVAARDGKPA  NTIFLNDVLL  TTKEDDDIMD  NGEGWGQEPI  MFEESRKYPP180
IVPLHLRYTP  LNTPPTLVRC  SRDGRMAVMD  TGGEHNSRVP  PEHLPLPLSV  TINHVYFQRR240
EDHAVMGVTT  RYCNKYTTVV  YYSHLPANPI  DSLESLKT278

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help