CAZyme3D

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Entry ID

Information for CAZyme ID: CAL93582.1

Basic Information

GenBank IDCAL93582.1
FamilyGT4
Sequence Length407
UniProt IDA1K427(100,100)Download
Average pLDDT?89.51
CAZy50 ID78517
CAZy50 RepNo, AJY52117.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID418699
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderRhodocyclales
FamilyZoogloeaceae
GenusAzoarcus
SpeciesAzoarcus olearius

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNILMVSDVY  FPRVNGVSTS  IETFRRSLHQ  QGVRSTLIAP  AYPGGGADDD  GVLRIPSRFV60
PLDPEDRMMR  SGHIAARADE  LAGEGFDLIH  IHTPFVAHYA  GLALARKLRL  PCVATYHTFF120
EEYLFHYVPT  LPRSWLRALA  RRFSRTQCNA  LHAVIVPSRA  MAAALLDYGV  ERPLEILPTG180
IPPDQFQGGD  GRFFRSRYEI  PADARLLLFV  GRVAHEKNIG  FLIEMIDHLR  HTEPRALLLI240
TGEGPALATL  RNAVAQRGLE  RHVRFLGYLD  RHSELHDCYR  AADLFVFASR  TETQGLVLLE300
AMALGTPVVA  LAQMGTCDIL  EGETGCRIGP  DDPAAFAALV  ASLLSRPELL  ERLAEEARQR360
ARHWHADDIA  ARLVRLYARW  IDASGSPRRV  PELTAGSAGR  RRLTSRS407

Predicted 3D structure by AlphaFold2 with pLDDT = 89.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(201-352)

MNILMVSDVY  FPRVNGVSTS  IETFRRSLHQ  QGVRSTLIAP  AYPGGGADDD  GVLRIPSRFV60
PLDPEDRMMR  SGHIAARADE  LAGEGFDLIH  IHTPFVAHYA  GLALARKLRL  PCVATYHTFF120
EEYLFHYVPT  LPRSWLRALA  RRFSRTQCNA  LHAVIVPSRA  MAAALLDYGV  ERPLEILPTG180
IPPDQFQGGD  GRFFRSRYEI  PADARLLLFV  GRVAHEKNIG  FLIEMIDHLR  HTEPRALLLI240
TGEGPALATL  RNAVAQRGLE  RHVRFLGYLD  RHSELHDCYR  AADLFVFASR  TETQGLVLLE300
AMALGTPVVA  LAQMGTCDIL  EGETGCRIGP  DDPAAFAALV  ASLLSRPELL  ERLAEEARQR360
ARHWHADDIA  ARLVRLYARW  IDASGSPRRV  PELTAGSAGR  RRLTSRS407

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help