CAZyme3D

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Entry ID

Information for CAZyme ID: CAK21564.1

Basic Information

GenBank IDCAK21564.1
FamilyCBM34, GH13_20
Sequence Length591
UniProt IDA0AKN2(100,100)Download
Average pLDDT?97.00
CAZy50 ID49473
CAZy50 RepNo, ALS02619.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID386043
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyListeriaceae
GenusListeria
SpeciesListeria welshimeri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEKAGIYHQP  ASSYAYSYDA  KTLHIRIRTK  RLDISEVTLI  AADPYLWNDG  KWQSESYSMR60
KIAETEEHDY  WFFAITPEHR  RLQYGFLLTD  TDGKTIFYGG  RGFFEPTEAN  LATMDYYFKF120
PFIHAVDTFE  APEWVSNTIW  YQIFPERFAN  GNPAISPENV  LPWGSKDPTP  TDFFGGDIEG180
IIEHLDYLVD  LGINGIYLTP  VFEAPTNHKY  DTIDYKKIDP  HFGDKETFRK  LVQEAHKRGI240
RIMLDAVFNH  IGDTSAEWQD  VIEKEEKSAY  RDWFHIHSFP  VRQNENGNIE  GEPTLSYDTF300
AFTTHMPKLN  TANPEVQKYL  LDIATYWIRE  FDIDGWRLDV  ANEVDHAFWK  EFKKAVQAEK360
EDIYILGEIW  HDSWIWLLGD  EFHAVMNYPF  TQTIIENFIE  EKITPEQMVS  GINEQYMRYP420
NQVNEVMFNM  LDSHDTARIL  TRANNDEEKV  KQALAFMFAH  TGSPCIYYGT  EIGMDGGNDP480
GCRKCMEWDE  AKQNQAMLAF  TKQLIALRKD  NQAIITSGEL  TWLDASSETG  ITAFTKELNG540
EKLHFLFNQA  KDNQDFTISF  EKEAMDIWNN  QAVSENLTIP  AKGFLVIKEN  S591

Predicted 3D structure by AlphaFold2 with pLDDT = 97.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(6-127)+GH13_20(176-480)

MEKAGIYHQP  ASSYAYSYDA  KTLHIRIRTK  RLDISEVTLI  AADPYLWNDG  KWQSESYSMR60
KIAETEEHDY  WFFAITPEHR  RLQYGFLLTD  TDGKTIFYGG  RGFFEPTEAN  LATMDYYFKF120
PFIHAVDTFE  APEWVSNTIW  YQIFPERFAN  GNPAISPENV  LPWGSKDPTP  TDFFGGDIEG180
IIEHLDYLVD  LGINGIYLTP  VFEAPTNHKY  DTIDYKKIDP  HFGDKETFRK  LVQEAHKRGI240
RIMLDAVFNH  IGDTSAEWQD  VIEKEEKSAY  RDWFHIHSFP  VRQNENGNIE  GEPTLSYDTF300
AFTTHMPKLN  TANPEVQKYL  LDIATYWIRE  FDIDGWRLDV  ANEVDHAFWK  EFKKAVQAEK360
EDIYILGEIW  HDSWIWLLGD  EFHAVMNYPF  TQTIIENFIE  EKITPEQMVS  GINEQYMRYP420
NQVNEVMFNM  LDSHDTARIL  TRANNDEEKV  KQALAFMFAH  TGSPCIYYGT  EIGMDGGNDP480
GCRKCMEWDE  AKQNQAMLAF  TKQLIALRKD  NQAIITSGEL  TWLDASSETG  ITAFTKELNG540
EKLHFLFNQA  KDNQDFTISF  EKEAMDIWNN  QAVSENLTIP  AKGFLVIKEN  S591

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help