CAZyme3D

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Entry ID

Information for CAZyme ID: CAK15256.1

Basic Information

GenBank IDCAK15256.1
FamilyGT26
Sequence Length249
UniProt IDQ1IAR0(100,100)Download
Average pLDDT?92.02
CAZy50 ID73151
CAZy50 RepNo, ALN80808.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID384676
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas entomophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDRHAWRIRW  KSLVETLHVV  GDPSAEQRLI  ERLSRPDKTT  VLAFVNAHAM  NLATHNVEFG60
KALTMADVLL  RDGSGMAILL  RQLGLEPGLN  MNGTDFIPKL  LAAYKGRRVA  FWGTREPYLG120
QAVSRSVECF  GIQPVSVRDG  FAELDNYLRL  ARETQPELIV  LGMGMPKQEA  LAAALAVNGE180
PCVVVCGGAI  LDFLGGKVER  APQWLRRLGG  EWVFRLAREP  RRLFMRYVVG  NPLFLLRAVL240
LRKAVAKGA249

Predicted 3D structure by AlphaFold2 with pLDDT = 92.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(63-226)

MDRHAWRIRW  KSLVETLHVV  GDPSAEQRLI  ERLSRPDKTT  VLAFVNAHAM  NLATHNVEFG60
KALTMADVLL  RDGSGMAILL  RQLGLEPGLN  MNGTDFIPKL  LAAYKGRRVA  FWGTREPYLG120
QAVSRSVECF  GIQPVSVRDG  FAELDNYLRL  ARETQPELIV  LGMGMPKQEA  LAAALAVNGE180
PCVVVCGGAI  LDFLGGKVER  APQWLRRLGG  EWVFRLAREP  RRLFMRYVVG  NPLFLLRAVL240
LRKAVAKGA249

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help