CAZyme3D

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Entry ID

Information for CAZyme ID: CAJ91465.1

Basic Information

GenBank IDCAJ91465.1
FamilyCE9
Sequence Length367
UniProt IDQ0KEV6(100,100)Download
Average pLDDT?97.20
CAZy50 ID43124
CAZy50 RepNo, ABA49797.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID381666
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusCupriavidus
SpeciesCupriavidus necator

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKGNILTPAG  WIFGEIHAGP  DGRIARIEGV  PASPEHNDAP  YVLPGFVDLL  NHGGGGKDFM60
DGEAAVPVIL  RAHVRFGTTS  LLGSTMTSPH  DVLLPALQAL  NRACAQRPPG  AARMLGVHLE120
GPYINPGKLG  AQPDTSATAT  PEELEQYLGA  APLKVVTLAP  ELPGHLDIIR  LLVARGVRVQ180
LGHTLGTYED  AVAALDAGAS  GFTHLFNAMT  PLQHRAPGMV  AAALAHAEFA  ELIPDLLHVH240
PGAIRAALRA  IPRLYAVTDA  TAAAGMPDGV  YHLGSQTVYK  VHGSVRLADG  TLAGSVLTMD300
QALRNFVSIG  LDLADASRRV  SLYPAQYLGM  SDRGMLAQGC  WADAVVLDRA  LLVRTVYVEG360
ECCVENA367

Predicted 3D structure by AlphaFold2 with pLDDT = 97.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE9(5-360)

MKGNILTPAG  WIFGEIHAGP  DGRIARIEGV  PASPEHNDAP  YVLPGFVDLL  NHGGGGKDFM60
DGEAAVPVIL  RAHVRFGTTS  LLGSTMTSPH  DVLLPALQAL  NRACAQRPPG  AARMLGVHLE120
GPYINPGKLG  AQPDTSATAT  PEELEQYLGA  APLKVVTLAP  ELPGHLDIIR  LLVARGVRVQ180
LGHTLGTYED  AVAALDAGAS  GFTHLFNAMT  PLQHRAPGMV  AAALAHAEFA  ELIPDLLHVH240
PGAIRAALRA  IPRLYAVTDA  TAAAGMPDGV  YHLGSQTVYK  VHGSVRLADG  TLAGSVLTMD300
QALRNFVSIG  LDLADASRRV  SLYPAQYLGM  SDRGMLAQGC  WADAVVLDRA  LLVRTVYVEG360
ECCVENA367

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help