CAZyme3D

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Entry ID

Information for CAZyme ID: CAI53945.1

Basic Information

GenBank IDCAI53945.1
FamilyGT10
Sequence Length483
UniProt IDQ5F2L1(100,100)Download
Average pLDDT?86.75
CAZy50 ID62982
CAZy50 RepNo, BAG64318.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID10116
KingdomEukaryota
PhylumChordata
ClassMammalia
OrderRodentia
FamilyMuridae
GenusRattus
SpeciesRattus norvegicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVRIPRRKLL  PSCLCMTATV  FLMVTVQVLV  ELGKFERKKF  KNSDLQDGQK  DVEGDPKHLN60
PLPKKDALAL  SGRNKVDAGS  YPIVLWWSPL  TGETGRLGQC  GADACFFTIN  RTFQHHPMTK120
AFLFYGTDFN  IDSLPLPRKA  HHDWALFHEE  SPKNNYKLFH  KPVITLFNHT  ATFSRHSDLP180
LTTQYLESVE  VLKSLRYLVP  LQSKNNLRQK  LAPLVYVQSD  CDPPSDRDSY  VRELMAYIEV240
DSYGECLQNK  HLPQQLKNPA  SMDADAFYRV  LAQYKFILAF  ENAVCDDYIT  EKFWRPLKLG300
VVPVYYGSPT  IADWLPSNRS  AILVSEFSHP  RELASFIRRL  DYDDGLYETY  VEWKLKGEIS360
NQRLLTALRE  REWGVQDINQ  DNYIDTFECM  VCRRVWANRR  LQEQGLPPKQ  WKADVSHLHC420
PEPTLFAFSS  PASPALRGRS  LRELWLPSFQ  QSKKEAQALR  WLVDRNQNFS  SEEFWALVFK480
DSF483

Predicted 3D structure by AlphaFold2 with pLDDT = 86.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT10(34-402)

MVRIPRRKLL  PSCLCMTATV  FLMVTVQVLV  ELGKFERKKF  KNSDLQDGQK  DVEGDPKHLN60
PLPKKDALAL  SGRNKVDAGS  YPIVLWWSPL  TGETGRLGQC  GADACFFTIN  RTFQHHPMTK120
AFLFYGTDFN  IDSLPLPRKA  HHDWALFHEE  SPKNNYKLFH  KPVITLFNHT  ATFSRHSDLP180
LTTQYLESVE  VLKSLRYLVP  LQSKNNLRQK  LAPLVYVQSD  CDPPSDRDSY  VRELMAYIEV240
DSYGECLQNK  HLPQQLKNPA  SMDADAFYRV  LAQYKFILAF  ENAVCDDYIT  EKFWRPLKLG300
VVPVYYGSPT  IADWLPSNRS  AILVSEFSHP  RELASFIRRL  DYDDGLYETY  VEWKLKGEIS360
NQRLLTALRE  REWGVQDINQ  DNYIDTFECM  VCRRVWANRR  LQEQGLPPKQ  WKADVSHLHC420
PEPTLFAFSS  PASPALRGRS  LRELWLPSFQ  QSKKEAQALR  WLVDRNQNFS  SEEFWALVFK480
DSF483

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help