CAZyme3D

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Entry ID

Information for CAZyme ID: CAH38964.1

Basic Information

GenBank IDCAH38964.1
FamilyGT112
Sequence Length419
UniProt IDQ63K74(100,100)Download
Average pLDDT?90.01
CAZy50 ID76236
CAZy50 RepNo, AIP83532.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID272560
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia pseudomallei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPAAPTGTHA  GSPAHIQAPT  HARGFAPPAD  IPTWSGTEGV  RFDFNDGCRV  LLPDGDWTVR60
LSDMHTDTPL  FDAQIGAGIV  TSTRRHFVPF  QIEIDSGEKR  VFKHQFDAHG  KPVLIQFEAG120
RLGEALGWFG  YAVKFQRRHR  CRLTCAMPAP  LIALLKPGYP  DIEFVTPELV  KPECYYATYR180
LGRFTGDEAR  AYQPSAPQLV  GVHRSAAYML  GVDPREAPPR  IELADDSRPL  AGRYVCIAAQ240
SALRCARWER  PGGWRQVQRF  LTAAGYRIVC  VDSPSPDVAD  ESSALAQVAH  VLPPDTPWTE300
RARWLRHAAC  LIGVPGDLAW  LAWAVGAPVV  LISGFTHPVS  EFDTPYRVIN  FHACNSCWND360
ASANFDDADA  SACPRHAGTL  RQFECARLVS  YAQVKHAAVR  LLEACAPPRS  PDQAHAFLD419

Predicted 3D structure by AlphaFold2 with pLDDT = 90.01 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(31-397)

MPAAPTGTHA  GSPAHIQAPT  HARGFAPPAD  IPTWSGTEGV  RFDFNDGCRV  LLPDGDWTVR60
LSDMHTDTPL  FDAQIGAGIV  TSTRRHFVPF  QIEIDSGEKR  VFKHQFDAHG  KPVLIQFEAG120
RLGEALGWFG  YAVKFQRRHR  CRLTCAMPAP  LIALLKPGYP  DIEFVTPELV  KPECYYATYR180
LGRFTGDEAR  AYQPSAPQLV  GVHRSAAYML  GVDPREAPPR  IELADDSRPL  AGRYVCIAAQ240
SALRCARWER  PGGWRQVQRF  LTAAGYRIVC  VDSPSPDVAD  ESSALAQVAH  VLPPDTPWTE300
RARWLRHAAC  LIGVPGDLAW  LAWAVGAPVV  LISGFTHPVS  EFDTPYRVIN  FHACNSCWND360
ASANFDDADA  SACPRHAGTL  RQFECARLVS  YAQVKHAAVR  LLEACAPPRS  PDQAHAFLD419

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help