CAZyme3D

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Entry ID

Information for CAZyme ID: CAG7904219.1

Basic Information

GenBank IDCAG7904219.1
FamilyCBM45, GH13_6
Sequence Length900
UniProt IDA0A3P6BX17(100,100)Download
Average pLDDT?75.97
CAZy50 ID17679
CAZy50 RepNo, BBG94204.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3711
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica rapa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSTVPIEPLL  HHSPLRHTSL  NGARTFLPSS  LNLRCHFTSK  KLHSIGRSVA  SGNSLGFLSS60
ERRRSIAIRA  SSSDTAVVET  TSQSDDVIFQ  ENFPVQRIDK  AEGKIYVRLK  QVKENDWELS120
VGCSLPGKWI  LHWGVSYVGD  TGSEWDQPPE  DMRPPGSLAI  KDYAIETPLE  KLSEGDSFHE180
VTINLNLESS  VAALNFVLKD  EESGAWYQHK  GRDFKVPLLD  DVPDDGNLIG  AKKGFGALGK240
LSNIVVNPDE  PGADVQEKGK  SSSGSTKEGK  GLEEFYEEMP  ISKHVAGDNS  VSVTARKCPE300
TSKNIVSIET  DLPGDVTVHW  GVCKNGNKKW  EIPAEPHPEE  TSLFKNKALR  TRLQRKDDGN360
GSSGIFSLDG  ELEGLCFVLK  LNENTWLNNR  GEDFYVPFLT  SAALPVESGA  AQVSGKTPKT420
NQEVSDSGFT  AEIITEIRNL  AIDISSHKNQ  KTNVKEVQEN  ILQEIEKLAA  EAYSIFRSTT480
PAFTPESDLE  SEDEKPEIKI  SSGTGSGFEI  LCQGFNWESH  KSGRWYQELQ  EKADELASLG540
FTVLWLPPPT  ESVSPEGYMP  KDLYNLNSRY  GTIDELKETV  KRFHKVGIKV  LGDAVLNHRC600
AHFKNSNGVW  NLFGGRLNWD  DRAVVADDPH  FQGRGNKSSG  DNFHAAPNID  HSQDFVRKDI660
KEWLCWMREE  VGYDGWRLDF  VRGFWGGYVK  DYMDASKPYF  AVGEYWDSLS  YTYGEMDYNQ720
DAHRQRIVDW  INATSGAAGA  FDVTTKGILH  AALQKCEYWR  LSDPKGKPPG  VVGWWPSRAV780
TFIENHDTGS  TQGHWRFPGG  KEMQGYAYIL  THPGTPAVFF  DHIYSDYRSE  IASLLSLRNR840
QKLHCRSEVN  IVKSERDVYA  AIIDEKVAMK  IGPGHYEPPS  GSQNWSVAVE  GRDYKVWETS900
900

Predicted 3D structure by AlphaFold2 with pLDDT = 75.97 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM45(131-214)+CBM45(318-394)+GH13_6(534-819)

MSTVPIEPLL  HHSPLRHTSL  NGARTFLPSS  LNLRCHFTSK  KLHSIGRSVA  SGNSLGFLSS60
ERRRSIAIRA  SSSDTAVVET  TSQSDDVIFQ  ENFPVQRIDK  AEGKIYVRLK  QVKENDWELS120
VGCSLPGKWI  LHWGVSYVGD  TGSEWDQPPE  DMRPPGSLAI  KDYAIETPLE  KLSEGDSFHE180
VTINLNLESS  VAALNFVLKD  EESGAWYQHK  GRDFKVPLLD  DVPDDGNLIG  AKKGFGALGK240
LSNIVVNPDE  PGADVQEKGK  SSSGSTKEGK  GLEEFYEEMP  ISKHVAGDNS  VSVTARKCPE300
TSKNIVSIET  DLPGDVTVHW  GVCKNGNKKW  EIPAEPHPEE  TSLFKNKALR  TRLQRKDDGN360
GSSGIFSLDG  ELEGLCFVLK  LNENTWLNNR  GEDFYVPFLT  SAALPVESGA  AQVSGKTPKT420
NQEVSDSGFT  AEIITEIRNL  AIDISSHKNQ  KTNVKEVQEN  ILQEIEKLAA  EAYSIFRSTT480
PAFTPESDLE  SEDEKPEIKI  SSGTGSGFEI  LCQGFNWESH  KSGRWYQELQ  EKADELASLG540
FTVLWLPPPT  ESVSPEGYMP  KDLYNLNSRY  GTIDELKETV  KRFHKVGIKV  LGDAVLNHRC600
AHFKNSNGVW  NLFGGRLNWD  DRAVVADDPH  FQGRGNKSSG  DNFHAAPNID  HSQDFVRKDI660
KEWLCWMREE  VGYDGWRLDF  VRGFWGGYVK  DYMDASKPYF  AVGEYWDSLS  YTYGEMDYNQ720
DAHRQRIVDW  INATSGAAGA  FDVTTKGILH  AALQKCEYWR  LSDPKGKPPG  VVGWWPSRAV780
TFIENHDTGS  TQGHWRFPGG  KEMQGYAYIL  THPGTPAVFF  DHIYSDYRSE  IASLLSLRNR840
QKLHCRSEVN  IVKSERDVYA  AIIDEKVAMK  IGPGHYEPPS  GSQNWSVAVE  GRDYKVWETS900
900

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help