Information for CAZyme ID: CAG7904219.1
Basic Information
GenBank ID | CAG7904219.1 |
Family | CBM45, GH13_6 |
Sequence Length | 900 |
UniProt ID | A0A3P6BX17(100,100)![]() |
Average pLDDT? | 75.97 |
CAZy50 ID | 17679 |
CAZy50 Rep | No, BBG94204.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 3711 |
Kingdom | Eukaryota |
Phylum | Streptophyta |
Class | Magnoliopsida |
Order | Brassicales |
Family | Brassicaceae |
Genus | Brassica |
Species | Brassica rapa |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MSTVPIEPLL HHSPLRHTSL NGARTFLPSS LNLRCHFTSK KLHSIGRSVA SGNSLGFLSS | 60 |
ERRRSIAIRA SSSDTAVVET TSQSDDVIFQ ENFPVQRIDK AEGKIYVRLK QVKENDWELS | 120 |
VGCSLPGKWI LHWGVSYVGD TGSEWDQPPE DMRPPGSLAI KDYAIETPLE KLSEGDSFHE | 180 |
VTINLNLESS VAALNFVLKD EESGAWYQHK GRDFKVPLLD DVPDDGNLIG AKKGFGALGK | 240 |
LSNIVVNPDE PGADVQEKGK SSSGSTKEGK GLEEFYEEMP ISKHVAGDNS VSVTARKCPE | 300 |
TSKNIVSIET DLPGDVTVHW GVCKNGNKKW EIPAEPHPEE TSLFKNKALR TRLQRKDDGN | 360 |
GSSGIFSLDG ELEGLCFVLK LNENTWLNNR GEDFYVPFLT SAALPVESGA AQVSGKTPKT | 420 |
NQEVSDSGFT AEIITEIRNL AIDISSHKNQ KTNVKEVQEN ILQEIEKLAA EAYSIFRSTT | 480 |
PAFTPESDLE SEDEKPEIKI SSGTGSGFEI LCQGFNWESH KSGRWYQELQ EKADELASLG | 540 |
FTVLWLPPPT ESVSPEGYMP KDLYNLNSRY GTIDELKETV KRFHKVGIKV LGDAVLNHRC | 600 |
AHFKNSNGVW NLFGGRLNWD DRAVVADDPH FQGRGNKSSG DNFHAAPNID HSQDFVRKDI | 660 |
KEWLCWMREE VGYDGWRLDF VRGFWGGYVK DYMDASKPYF AVGEYWDSLS YTYGEMDYNQ | 720 |
DAHRQRIVDW INATSGAAGA FDVTTKGILH AALQKCEYWR LSDPKGKPPG VVGWWPSRAV | 780 |
TFIENHDTGS TQGHWRFPGG KEMQGYAYIL THPGTPAVFF DHIYSDYRSE IASLLSLRNR | 840 |
QKLHCRSEVN IVKSERDVYA AIIDEKVAMK IGPGHYEPPS GSQNWSVAVE GRDYKVWETS | 900 |
900 |
Predicted 3D structure by AlphaFold2 with pLDDT = 75.97 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM45(131-214)+CBM45(318-394)+GH13_6(534-819)
MSTVPIEPLL HHSPLRHTSL NGARTFLPSS LNLRCHFTSK KLHSIGRSVA SGNSLGFLSS | 60 |
ERRRSIAIRA SSSDTAVVET TSQSDDVIFQ ENFPVQRIDK AEGKIYVRLK QVKENDWELS | 120 |
VGCSLPGKWI LHWGVSYVGD TGSEWDQPPE DMRPPGSLAI KDYAIETPLE KLSEGDSFHE | 180 |
VTINLNLESS VAALNFVLKD EESGAWYQHK GRDFKVPLLD DVPDDGNLIG AKKGFGALGK | 240 |
LSNIVVNPDE PGADVQEKGK SSSGSTKEGK GLEEFYEEMP ISKHVAGDNS VSVTARKCPE | 300 |
TSKNIVSIET DLPGDVTVHW GVCKNGNKKW EIPAEPHPEE TSLFKNKALR TRLQRKDDGN | 360 |
GSSGIFSLDG ELEGLCFVLK LNENTWLNNR GEDFYVPFLT SAALPVESGA AQVSGKTPKT | 420 |
NQEVSDSGFT AEIITEIRNL AIDISSHKNQ KTNVKEVQEN ILQEIEKLAA EAYSIFRSTT | 480 |
PAFTPESDLE SEDEKPEIKI SSGTGSGFEI LCQGFNWESH KSGRWYQELQ EKADELASLG | 540 |
FTVLWLPPPT ESVSPEGYMP KDLYNLNSRY GTIDELKETV KRFHKVGIKV LGDAVLNHRC | 600 |
AHFKNSNGVW NLFGGRLNWD DRAVVADDPH FQGRGNKSSG DNFHAAPNID HSQDFVRKDI | 660 |
KEWLCWMREE VGYDGWRLDF VRGFWGGYVK DYMDASKPYF AVGEYWDSLS YTYGEMDYNQ | 720 |
DAHRQRIVDW INATSGAAGA FDVTTKGILH AALQKCEYWR LSDPKGKPPG VVGWWPSRAV | 780 |
TFIENHDTGS TQGHWRFPGG KEMQGYAYIL THPGTPAVFF DHIYSDYRSE IASLLSLRNR | 840 |
QKLHCRSEVN IVKSERDVYA AIIDEKVAMK IGPGHYEPPS GSQNWSVAVE GRDYKVWETS | 900 |
900 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.