CAZyme3D

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Entry ID

Information for CAZyme ID: CAG7896529.1

Basic Information

GenBank IDCAG7896529.1
FamilyGT14
Sequence Length425
UniProt IDA0A3P6B9E8(100,100)Download
Average pLDDT?87.18
CAZy50 ID70753
CAZy50 RepNo, ACG29648.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3711
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica rapa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEKKSMSHGH  KFSSSMGYAN  MEKKWVFSLL  IASLVCSFLI  VTYFNMSLLF  SSLRPPIIET60
SSHSKVDNLP  RFAYLVSGSK  GDLESLWRTL  RALYHPRNQY  IVHMDLESPF  EERLELASRV120
SNDSMYSKIG  NVYMITKANL  VSYTGPTMVA  NTLHACAILL  KRSPDWDWFI  NLSASDYPLV180
TQDDLLYTFS  TLDRNLNFIE  LTADLGWKNK  YRAMPLIIDP  ALYMLNKSNI  IWVRPDRSLP240
NAFKLHTGSA  WMVLSRPFVE  YIIWGWDNLP  RTLLMYYTNF  VSSPEFYFHT  IICNVPEFSK300
TALNHDLHYI  AWHRPPRQHP  RLLSLTNMRP  MIASGAAFAR  KFSRNDSALD  RIDKELLMRT360
NQEGFTPGGW  CGGKPECSVV  EDVARINPGS  GAERLKGLVD  RLVSEAKSGK  SCGNVNLLQW420
DKGYL425

Predicted 3D structure by AlphaFold2 with pLDDT = 87.18 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT14(72-324)

MEKKSMSHGH  KFSSSMGYAN  MEKKWVFSLL  IASLVCSFLI  VTYFNMSLLF  SSLRPPIIET60
SSHSKVDNLP  RFAYLVSGSK  GDLESLWRTL  RALYHPRNQY  IVHMDLESPF  EERLELASRV120
SNDSMYSKIG  NVYMITKANL  VSYTGPTMVA  NTLHACAILL  KRSPDWDWFI  NLSASDYPLV180
TQDDLLYTFS  TLDRNLNFIE  LTADLGWKNK  YRAMPLIIDP  ALYMLNKSNI  IWVRPDRSLP240
NAFKLHTGSA  WMVLSRPFVE  YIIWGWDNLP  RTLLMYYTNF  VSSPEFYFHT  IICNVPEFSK300
TALNHDLHYI  AWHRPPRQHP  RLLSLTNMRP  MIASGAAFAR  KFSRNDSALD  RIDKELLMRT360
NQEGFTPGGW  CGGKPECSVV  EDVARINPGS  GAERLKGLVD  RLVSEAKSGK  SCGNVNLLQW420
DKGYL425

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help