Information for CAZyme ID: CAG7896529.1
Basic Information
GenBank ID | CAG7896529.1 |
Family | GT14 |
Sequence Length | 425 |
UniProt ID | A0A3P6B9E8(100,100)![]() |
Average pLDDT? | 87.18 |
CAZy50 ID | 70753 |
CAZy50 Rep | No, ACG29648.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 3711 |
Kingdom | Eukaryota |
Phylum | Streptophyta |
Class | Magnoliopsida |
Order | Brassicales |
Family | Brassicaceae |
Genus | Brassica |
Species | Brassica rapa |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MEKKSMSHGH KFSSSMGYAN MEKKWVFSLL IASLVCSFLI VTYFNMSLLF SSLRPPIIET | 60 |
SSHSKVDNLP RFAYLVSGSK GDLESLWRTL RALYHPRNQY IVHMDLESPF EERLELASRV | 120 |
SNDSMYSKIG NVYMITKANL VSYTGPTMVA NTLHACAILL KRSPDWDWFI NLSASDYPLV | 180 |
TQDDLLYTFS TLDRNLNFIE LTADLGWKNK YRAMPLIIDP ALYMLNKSNI IWVRPDRSLP | 240 |
NAFKLHTGSA WMVLSRPFVE YIIWGWDNLP RTLLMYYTNF VSSPEFYFHT IICNVPEFSK | 300 |
TALNHDLHYI AWHRPPRQHP RLLSLTNMRP MIASGAAFAR KFSRNDSALD RIDKELLMRT | 360 |
NQEGFTPGGW CGGKPECSVV EDVARINPGS GAERLKGLVD RLVSEAKSGK SCGNVNLLQW | 420 |
DKGYL | 425 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.18 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT14(72-324)
MEKKSMSHGH KFSSSMGYAN MEKKWVFSLL IASLVCSFLI VTYFNMSLLF SSLRPPIIET | 60 |
SSHSKVDNLP RFAYLVSGSK GDLESLWRTL RALYHPRNQY IVHMDLESPF EERLELASRV | 120 |
SNDSMYSKIG NVYMITKANL VSYTGPTMVA NTLHACAILL KRSPDWDWFI NLSASDYPLV | 180 |
TQDDLLYTFS TLDRNLNFIE LTADLGWKNK YRAMPLIIDP ALYMLNKSNI IWVRPDRSLP | 240 |
NAFKLHTGSA WMVLSRPFVE YIIWGWDNLP RTLLMYYTNF VSSPEFYFHT IICNVPEFSK | 300 |
TALNHDLHYI AWHRPPRQHP RLLSLTNMRP MIASGAAFAR KFSRNDSALD RIDKELLMRT | 360 |
NQEGFTPGGW CGGKPECSVV EDVARINPGS GAERLKGLVD RLVSEAKSGK SCGNVNLLQW | 420 |
DKGYL | 425 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.