CAZyme3D

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Entry ID

Information for CAZyme ID: CAG7874319.1

Basic Information

GenBank IDCAG7874319.1
FamilyGT31
Sequence Length511
UniProt IDA0A3P5YQN3(100,100)Download
Average pLDDT?85.71
CAZy50 ID62457
CAZy50 RepNo, CBC28049.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3711
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica rapa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAIFDPFKLR  HKPPSIFPTT  VKTGHVFSVV  AKFFFTICTL  ISVAMIFSYI  IFSGCSDYQR60
IADHRRFGRD  NVISTTNSSS  SAIGQKNQSS  EATDISHIFF  GIGGSIQTWR  ERSRYTELWW120
RPNDTRGFVW  LDEEPPLNMT  WLPTYPPYKV  SEDTSRFNYA  CWYGTRSAIR  MARIIKESFD180
LGLTNVRWFV  MGDDDTVFFV  DNLITVLSKY  DHNQMYYIGG  NSESVEQAIV  HSYAMAYGGG240
GIAISYPLAV  ELVKILDGCI  DRYASLYGSD  QKIEACISGI  GVPLTKELGF  HQIDIRGNPY300
GILAAHPVAP  LVSLHHLDYV  DPIFPASTQI  DALRRLISSY  KTDPSRILQH  SFCHDQTRNW360
SVSVSWGYTI  QIYPSLVTAR  ELETPFLTFK  SWRTSSSEPF  TFDTRPISED  PCERPIVYFL420
DRVYEVGSNQ  TLTTYRKHVE  VSDAQCESPE  YSRVSSVEFI  DISLAKWMPA  LWKMAPRRQS480
CEIINGKEDS  EYVINVKIRH  FNPFESVSPQ  S511

Predicted 3D structure by AlphaFold2 with pLDDT = 85.71 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT31(183-254)

MAIFDPFKLR  HKPPSIFPTT  VKTGHVFSVV  AKFFFTICTL  ISVAMIFSYI  IFSGCSDYQR60
IADHRRFGRD  NVISTTNSSS  SAIGQKNQSS  EATDISHIFF  GIGGSIQTWR  ERSRYTELWW120
RPNDTRGFVW  LDEEPPLNMT  WLPTYPPYKV  SEDTSRFNYA  CWYGTRSAIR  MARIIKESFD180
LGLTNVRWFV  MGDDDTVFFV  DNLITVLSKY  DHNQMYYIGG  NSESVEQAIV  HSYAMAYGGG240
GIAISYPLAV  ELVKILDGCI  DRYASLYGSD  QKIEACISGI  GVPLTKELGF  HQIDIRGNPY300
GILAAHPVAP  LVSLHHLDYV  DPIFPASTQI  DALRRLISSY  KTDPSRILQH  SFCHDQTRNW360
SVSVSWGYTI  QIYPSLVTAR  ELETPFLTFK  SWRTSSSEPF  TFDTRPISED  PCERPIVYFL420
DRVYEVGSNQ  TLTTYRKHVE  VSDAQCESPE  YSRVSSVEFI  DISLAKWMPA  LWKMAPRRQS480
CEIINGKEDS  EYVINVKIRH  FNPFESVSPQ  S511

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help