CAZyme3D

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Entry ID

Information for CAZyme ID: CAF22756.1

Basic Information

GenBank IDCAF22756.1
FamilyGH171
Sequence Length411
UniProt IDQ6MF93(100,100)Download
Average pLDDT?92.24
CAZy50 ID89787
CAZy50 RepNo, BBI18154.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID264201
KingdomBacteria
PhylumChlamydiota
ClassChlamydiia
OrderParachlamydiales
FamilyParachlamydiaceae
GenusCandidatus Protochlamydia
SpeciesCandidatus Protochlamydia amoebophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQILRTLFLF  FIFIVIPTVG  FTQVTVGIDS  LFDSSYVELI  KGKRIGLVTN  HTAINHEGET60
TINCLKKNAS  FFEFKLQALF  APEHGLQGIQ  YADEIVKDSC  ETEIPIYSLH  GSTRRPTQES120
LKNLDVLIYD  IQDIGSRSYT  YISTLFYVME  EAAKLKIPVI  VLDRPNPING  LTIDGPLLEE180
KWRSFVGYVN  IPYCHGLTIG  ELASYFNGEY  KINCLLKVIP  MKGWKREMTF  NETGLIWIPT240
SPHIPEAETS  LYYPITGLLG  ELQLVNIGVG  YTLPFKVVGA  PWINAEKFAK  KLNEQKFPGV300
RFHPFYYRPF  FGRFAHQNCQ  GVLIILTNPK  KYLPVSTQYL  LIGMLKSLYP  KEFQAALNQS360
SHRQDMFNKV  NGTAEVFRII  KEEQYILWKL  RSLHEKERAL  FVNKRASYLL  Y411

Predicted 3D structure by AlphaFold2 with pLDDT = 92.24 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(45-411)

MQILRTLFLF  FIFIVIPTVG  FTQVTVGIDS  LFDSSYVELI  KGKRIGLVTN  HTAINHEGET60
TINCLKKNAS  FFEFKLQALF  APEHGLQGIQ  YADEIVKDSC  ETEIPIYSLH  GSTRRPTQES120
LKNLDVLIYD  IQDIGSRSYT  YISTLFYVME  EAAKLKIPVI  VLDRPNPING  LTIDGPLLEE180
KWRSFVGYVN  IPYCHGLTIG  ELASYFNGEY  KINCLLKVIP  MKGWKREMTF  NETGLIWIPT240
SPHIPEAETS  LYYPITGLLG  ELQLVNIGVG  YTLPFKVVGA  PWINAEKFAK  KLNEQKFPGV300
RFHPFYYRPF  FGRFAHQNCQ  GVLIILTNPK  KYLPVSTQYL  LIGMLKSLYP  KEFQAALNQS360
SHRQDMFNKV  NGTAEVFRII  KEEQYILWKL  RSLHEKERAL  FVNKRASYLL  Y411

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help