CAZyme3D

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Entry ID

Information for CAZyme ID: CAE6958139.1

Basic Information

GenBank IDCAE6958139.1
FamilyCBM5, GH18
Sequence Length1054
UniProt IDA0A812HR48(100,100)Download
Average pLDDT?90.44
CAZy50 ID11502
CAZy50 RepNo, UUM32877.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2751176
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. B1ASS3

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHLRSGKAVK  SAFTLSTLTA  SCLMAFNSYA  AVDCAPLEVW  DSSKVYNGGD  QVQHEGNAYK60
ARYWTQNNNP  AQAGEWGEWE  NLGACSGTGP  VDPPVNEVPT  VTLTSPSASA  SITAGDVVNL120
AADAADTDGS  ISKVEFFVDG  ALVGTSTAAP  FTASWTATEG  AHEFSTKAYD  DKNAVSVASA180
VTLTVNAGQP  GNEAPTVDVA  LSATSVELGA  TVTVTANAAD  ADGTVAKVEF  FAAGSLVGTV240
TTAPYAVDFT  PAQAGSVSIY  AKATDDAGAT  TDSSLVSLTV  NGGAITSNCR  PDGLYQTAGV300
DVPYCTIYDE  EGRELMGADH  PRRVIGYFTS  WRSGDDPQAA  YLVKDIPWDQ  LTHINYAFVS360
IGSDGKVNVG  DVTDPTNPAT  GKTWPGVEVD  PALGFKGHFG  ALATYKQKHD  VKTLISIGGW420
AETGGHFGAD  GNRVADGGFY  TMTTNADGSI  NHAGIEKFAT  SAVEMMRTYK  FDGLDIDYEY480
PTSMAGAGNP  YDKDFMEPRR  PYLWASYQEL  MKVLREKLDA  ASAQDGIHYM  LTIAAPSSGY540
LLRGMETFDV  TKYLDYVNIM  TYDLHGAWND  HVGHNAALFD  TGKDSELAQW  NVYGTAAYGG600
IGYLNTDWAY  HYFRGSMPAG  RINIGVPYYT  RGWQGVTGGD  NGLWGRAALP  NQSECAPGTG660
EGEKNNCGHG  AIGIDNMWHD  TDPKGNEMGA  GSNPMWHAKN  LEKGIWGSYA  QAYGLDPVND720
PSDKFVGSYT  RHYDDVAVAP  WLWNAEKSVF  LSTEDKASVE  VKADYVIDKE  IGGIMFWELA780
GDYNCYVLDA  NGNRTTIDAT  EQACAAGNGE  YHMGNTMTKA  IYDKFKSATP  YGNKIATGAI840
PTEAVDIAVS  VGGFKVGDQN  YPINPKITFT  NNTGQAIPGG  TEFQFDIPVS  APDNAKDQSG900
GGLSVIASGH  TRANNIGGLD  GVMHRVSFSL  PAWKDLPAGG  TYELDMVYYL  PISGPANYTV960
ISGGKEFAFK  FEQPDLPIGD  LNSGTGGGGG  TEPGTCDTTG  LVTYPDLPQT  DWQGNPSHAN1020
QGDKVIHNGV  VYQANWWTAS  EPGSDGSWST  VCNV1054

Predicted 3D structure by AlphaFold2 with pLDDT = 90.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM5(39-76)+GH18(322-784)+CBM5(1011-1048)

MHLRSGKAVK  SAFTLSTLTA  SCLMAFNSYA  AVDCAPLEVW  DSSKVYNGGD  QVQHEGNAYK60
ARYWTQNNNP  AQAGEWGEWE  NLGACSGTGP  VDPPVNEVPT  VTLTSPSASA  SITAGDVVNL120
AADAADTDGS  ISKVEFFVDG  ALVGTSTAAP  FTASWTATEG  AHEFSTKAYD  DKNAVSVASA180
VTLTVNAGQP  GNEAPTVDVA  LSATSVELGA  TVTVTANAAD  ADGTVAKVEF  FAAGSLVGTV240
TTAPYAVDFT  PAQAGSVSIY  AKATDDAGAT  TDSSLVSLTV  NGGAITSNCR  PDGLYQTAGV300
DVPYCTIYDE  EGRELMGADH  PRRVIGYFTS  WRSGDDPQAA  YLVKDIPWDQ  LTHINYAFVS360
IGSDGKVNVG  DVTDPTNPAT  GKTWPGVEVD  PALGFKGHFG  ALATYKQKHD  VKTLISIGGW420
AETGGHFGAD  GNRVADGGFY  TMTTNADGSI  NHAGIEKFAT  SAVEMMRTYK  FDGLDIDYEY480
PTSMAGAGNP  YDKDFMEPRR  PYLWASYQEL  MKVLREKLDA  ASAQDGIHYM  LTIAAPSSGY540
LLRGMETFDV  TKYLDYVNIM  TYDLHGAWND  HVGHNAALFD  TGKDSELAQW  NVYGTAAYGG600
IGYLNTDWAY  HYFRGSMPAG  RINIGVPYYT  RGWQGVTGGD  NGLWGRAALP  NQSECAPGTG660
EGEKNNCGHG  AIGIDNMWHD  TDPKGNEMGA  GSNPMWHAKN  LEKGIWGSYA  QAYGLDPVND720
PSDKFVGSYT  RHYDDVAVAP  WLWNAEKSVF  LSTEDKASVE  VKADYVIDKE  IGGIMFWELA780
GDYNCYVLDA  NGNRTTIDAT  EQACAAGNGE  YHMGNTMTKA  IYDKFKSATP  YGNKIATGAI840
PTEAVDIAVS  VGGFKVGDQN  YPINPKITFT  NNTGQAIPGG  TEFQFDIPVS  APDNAKDQSG900
GGLSVIASGH  TRANNIGGLD  GVMHRVSFSL  PAWKDLPAGG  TYELDMVYYL  PISGPANYTV960
ISGGKEFAFK  FEQPDLPIGD  LNSGTGGGGG  TEPGTCDTTG  LVTYPDLPQT  DWQGNPSHAN1020
QGDKVIHNGV  VYQANWWTAS  EPGSDGSWST  VCNV1054

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help