CAZyme3D

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Entry ID

Information for CAZyme ID: CAD7358786.1

Basic Information

GenBank IDCAD7358786.1
FamilyGT2
Sequence Length624
UniProt IDA0A7Z7QN41(100,100)Download
Average pLDDT?89.67
CAZy50 ID48798
CAZy50 RepNo, QUM67271.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1295
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyStaphylococcaceae
GenusStaphylococcus
SpeciesStaphylococcus schleiferi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGELVSIVIS  VYNKAEFIEK  CLDSLVRLDF  KKDEMEVIVV  DDCSTDNSVE  LIKKYVERYH60
FIHLIELDTN  SGGPSEPRNI  GIKAANGKYI  AILDADDWLD  DKGFPSLVKS  LDENHDDIGF120
GQIYKHTNNK  VQKVALFASY  KEDQHLVPYS  IEKIFRSVGP  PGKVFKKSLV  IDHNIEFKHR180
KYGEDKLFFS  ELISKAQTAT  MTPVGVYHTN  RYQENVSLVK  QTSVYEKAVI  NLEILKEVVN240
LDIPKAALKA  ICARFVELDF  MRRMFHTKTF  VKSLSRKDYY  QIFDEAVSII  EQKGFTIPQL300
LTMDVYRMLY  DAYKTYDKEI  FEQLLETLVH  QSSQSLFIEN  GQVYQALYVN  QHHFKNLPIE360
CYPVYLGTRR  INGEDYEWIH  LLRGEKVEIK  DVLAVEINNA  AHAKSLNFQL  DNDVIAIKTK420
DLASMASYNI  NLKIKFNGYE  ETLVNASYPT  HQQDRVMKRQ  NFKVEFQNKK  GASSSSNSYF480
KENPKRVVTI  KKIKRYEDKD  FKKPISDVEP  GTAFYISKIV  ASSNDTPRLQ  TVEGEVITAN540
QKFVEQLNKI  DEQYYTEVPK  TVEIIKACYL  YDSRSFKKEP  IDSLKPGDTL  TIEQIIYTAN600
QTPRLKTTTG  AYLTANKQFV  KAIS624

Predicted 3D structure by AlphaFold2 with pLDDT = 89.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(6-133)

MGELVSIVIS  VYNKAEFIEK  CLDSLVRLDF  KKDEMEVIVV  DDCSTDNSVE  LIKKYVERYH60
FIHLIELDTN  SGGPSEPRNI  GIKAANGKYI  AILDADDWLD  DKGFPSLVKS  LDENHDDIGF120
GQIYKHTNNK  VQKVALFASY  KEDQHLVPYS  IEKIFRSVGP  PGKVFKKSLV  IDHNIEFKHR180
KYGEDKLFFS  ELISKAQTAT  MTPVGVYHTN  RYQENVSLVK  QTSVYEKAVI  NLEILKEVVN240
LDIPKAALKA  ICARFVELDF  MRRMFHTKTF  VKSLSRKDYY  QIFDEAVSII  EQKGFTIPQL300
LTMDVYRMLY  DAYKTYDKEI  FEQLLETLVH  QSSQSLFIEN  GQVYQALYVN  QHHFKNLPIE360
CYPVYLGTRR  INGEDYEWIH  LLRGEKVEIK  DVLAVEINNA  AHAKSLNFQL  DNDVIAIKTK420
DLASMASYNI  NLKIKFNGYE  ETLVNASYPT  HQQDRVMKRQ  NFKVEFQNKK  GASSSSNSYF480
KENPKRVVTI  KKIKRYEDKD  FKKPISDVEP  GTAFYISKIV  ASSNDTPRLQ  TVEGEVITAN540
QKFVEQLNKI  DEQYYTEVPK  TVEIIKACYL  YDSRSFKKEP  IDSLKPGDTL  TIEQIIYTAN600
QTPRLKTTTG  AYLTANKQFV  KAIS624

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help