CAZyme3D

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Entry ID

Information for CAZyme ID: CAB78943.1

Basic Information

GenBank IDCAB78943.1
FamilyCE13
Sequence Length362
UniProt IDQ940J8(100,100)Download
Average pLDDT?93.55
CAZy50 ID65485
CAZy50 RepNo, AEE84178.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGRLKQCWSS  LLVLAVLVIG  TGAVPITYLQ  SAVAKGAVCL  DGSAPAYHFD  KGFGSGVNNW60
IVHMEGGGWC  TDVASCNERK  GTMKGSSKFM  NKDFGFSGIL  GGKQSTNPDF  YNWNRIKVRY120
CDGSSFTGNV  EAVNPAILSG  CSAGALAAIL  HCDTFRAILP  RTASVKCVSD  AGYFIHGKDI180
TGGSYIQSYY  SKVVALHGSA  KSLPVSCTSK  MKPELCFFPQ  YVVPSMRTPL  FVINAAFDSW240
QIKNVLAPTA  VDKGKEWKNC  KLDLKKCSAA  QLKTVQGFRD  QMMRALSPVH  STPSRGLFLD300
SCHAHCQGGS  AASWSGDKGP  QVANTRIAKA  VGNWFYGRSA  FQKIDCPSPT  CNPTCPAIST360
ED362

Predicted 3D structure by AlphaFold2 with pLDDT = 93.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE13(131-342)

MGRLKQCWSS  LLVLAVLVIG  TGAVPITYLQ  SAVAKGAVCL  DGSAPAYHFD  KGFGSGVNNW60
IVHMEGGGWC  TDVASCNERK  GTMKGSSKFM  NKDFGFSGIL  GGKQSTNPDF  YNWNRIKVRY120
CDGSSFTGNV  EAVNPANKLF  FRGARVWRAV  VDDLMAKGMK  NAQNAILSGC  SAGALAAILH180
CDTFRAILPR  TASVKCVSDA  GYFIHGKDIT  GGSYIQSYYS  KVVALHGSAK  SLPVSCTSKM240
KPELCFFPQY  VVPSMRTPLF  VINAAFDSWQ  IKNVLAPTAV  DKGKEWKNCK  LDLKKCSAAQ300
LKTVQGFRDQ  MMRALSPVHS  TPSRGLFLDS  CHAHCQGGSA  ASWSGDKGPQ  VANTRIAKAV360
GNWFYGRSAF  QKIDCPSPTC  NPTCPAISTE  D391

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help