CAZyme3D

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Entry ID

Information for CAZyme ID: CAB61811.1

Basic Information

GenBank IDCAB61811.1
FamilyGH50
Sequence Length798
UniProt IDQ9RKF0(100,100)Download
Average pLDDT?90.51
CAZy50 ID27513
CAZy50 RepNo, QHY94217.1
Structure Cluster-
EC Number(s)3.2.1.81
Substrates(s)agarose

Taxonomy

Tax ID100226
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces coelicolor

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTVHKRACTT  PPPRASRSFR  VRWPVLIAAA  CAGLVLATTS  PPAVAAGAHD  LGDETMLYDF60
QDGLVPAEVG  PYQAKTTIVG  RGDKKLRVDF  QARKNYYSSF  SVRPEPVWNW  SAEESESLGI120
AMELTNPSDR  SVQLTIDLES  STGVATRSVN  VPAGGGGTYY  FDVDSPALHR  DTGLRADPSW180
LADKDVTSAV  WMWGSKETDT  SRISQLNFYV  AGLLHDRSVI  VDDIRVVRDA  PADPDYLKGL240
VDAFGQNNKV  DYKGKVSRTS  EILRQRAAEA  KDLRRHPVPE  DRSRYGGWLN  GPRLEATGNF300
RVEKYQGRWT  LVDPDGYLFF  STGIDNARMF  DSPTTTGYDF  DHDAIQELPP  PSLTAGGPED360
LNRVQKSALP  TRTKMSETRA  DLFSKLPKYR  TRAGEGFGYA  PDTLAGPVAQ  GETYSFYKAN420
VARKYPGSNY  MERWRDNTVD  RMLSWGFTSF  GNWTDPEMYD  NDRIPYFAHG  WIKGDFKTVS480
TGQDYWGPMP  DPFDPAFSDA  AARTARAVAD  EVADSPLAIG  VFMDNELSWG  NAGSFSTRYG540
VVIDTMSRDA  AESPTKSAFS  DELEEKYGTI  DALNAAWQTT  VPSWEALRSG  SADLGSDETA600
KESDYSALMT  LYATQYFKTV  DAELDKVMPD  HLYAGSRFAS  WGRTPEVVEA  ASKYVDIMSY660
NEYREGLHPS  EWAFLEELDK  PSLIGEFHMG  TTTTGQPHPG  LVSAGTQAER  ARMYAEYMEQ720
LIDNPYMVGG  HWFQYADSPV  TGRALDGENY  NIGFVSVTDR  PYPEIVAAAR  DVNQRLYDRR780
YGNLATAEGH  YTGRRSAE798

Predicted 3D structure by AlphaFold2 with pLDDT = 90.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(105-777)

MTVHKRACTT  PPPRASRSFR  VRWPVLIAAA  CAGLVLATTS  PPAVAAGAHD  LGDETMLYDF60
QDGLVPAEVG  PYQAKTTIVG  RGDKKLRVDF  QARKNYYSSF  SVRPEPVWNW  SAEESESLGI120
AMELTNPSDR  SVQLTIDLES  STGVATRSVN  VPAGGGGTYY  FDVDSPALHR  DTGLRADPSW180
LADKDVTSAV  WMWGSKETDT  SRISQLNFYV  AGLLHDRSVI  VDDIRVVRDA  PADPDYLKGL240
VDAFGQNNKV  DYKGKVSRTS  EILRQRAAEA  KDLRRHPVPE  DRSRYGGWLN  GPRLEATGNF300
RVEKYQGRWT  LVDPDGYLFF  STGIDNARMF  DSPTTTGYDF  DHDAIQELPP  PSLTAGGPED360
LNRVQKSALP  TRTKMSETRA  DLFSKLPKYR  TRAGEGFGYA  PDTLAGPVAQ  GETYSFYKAN420
VARKYPGSNY  MERWRDNTVD  RMLSWGFTSF  GNWTDPEMYD  NDRIPYFAHG  WIKGDFKTVS480
TGQDYWGPMP  DPFDPAFSDA  AARTARAVAD  EVADSPLAIG  VFMDNELSWG  NAGSFSTRYG540
VVIDTMSRDA  AESPTKSAFS  DELEEKYGTI  DALNAAWQTT  VPSWEALRSG  SADLGSDETA600
KESDYSALMT  LYATQYFKTV  DAELDKVMPD  HLYAGSRFAS  WGRTPEVVEA  ASKYVDIMSY660
NEYREGLHPS  EWAFLEELDK  PSLIGEFHMG  TTTTGQPHPG  LVSAGTQAER  ARMYAEYMEQ720
LIDNPYMVGG  HWFQYADSPV  TGRALDGENY  NIGFVSVTDR  PYPEIVAAAR  DVNQRLYDRR780
YGNLATAEGH  YTGRRSAE798

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help