CAZyme3D

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Entry ID

Information for CAZyme ID: CAB3263807.1

Basic Information

GenBank IDCAB3263807.1
FamilyGT18
Sequence Length649
UniProt IDA0A6F9DK32(100,100)Download
Average pLDDT?83.44
CAZy50 ID34111
CAZy50 RepNo, CAB3263808.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID59560
KingdomEukaryota
PhylumChordata
ClassAscidiacea
OrderPhlebobranchia
FamilyAscidiidae
GenusPhallusia
SpeciesPhallusia mammillata

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGGNRKLLCW  SMRSWCSVKS  LLRFVSVIVC  WLVLKKLLTV  QVTNRETREI  SPPECPPLPY60
LEGNKDCELK  MQWMRKMWKS  DQCYADWEVD  GSECSFYKYL  SEVEQWCPRF  NAQSAGLQMK120
STIKNEFAEV  RDDLTDLYKM  FGNQIHFQWI  KQRVQRMEVN  WIAAGQAFAA  KFKTKRKKKK180
VLLHMGLLAD  ESGWKLGKGA  FKGSPLGELV  QWADVMTSLF  VMGHDIAVSL  STRDLGRIFG240
KNCPPRETVV  DIIYIDILGM  RMLRNNFNNK  FHLIQCKLRP  VDSFGTEPEF  NNPAYAARKG300
LTTEWGMWNL  SPKQFNNMFP  HTPDNTFLGF  VIEQQVDTLE  QMDKENIALV  YGKDEHYFEG360
KSEYLGAIYD  AGLQIHGTIS  ARSSKHVPKY  VVNHGVIPGN  QLQALLGKTK  VFVGLGDPGE420
GPAALEAIAN  GAVFLNPKFA  DGSPQAIAFN  EGYKGKPTRR  RPHSQHPYAE  VFIGSPHVRM480
VDMSDVESVK  RIVTDIIQSP  DVGPYLPHEF  TWLGMIERLA  HQVEMQDFCR  KKNEVWPPLS540
AMQVIVSSQS  ETCVDSCQSR  GLVCEPAYFS  EINSKATFRK  LSINCNQFLI  PETNDEDSAY600
PAYRDNLCYL  QSNNQIFSCA  GRQTNARRLC  PCRDYLKGQV  ALCNECLLP649

Predicted 3D structure by AlphaFold2 with pLDDT = 83.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT18(52-647)

MGGNRKLLCW  SMRSWCSVKS  LLRFVSVIVC  WLVLKKLLTV  QVTNRETREI  SPPECPPLPY60
LEGNKDCELK  MQWMRKMWKS  DQCYADWEVD  GSECSFYKYL  SEVEQWCPRF  NAQSAGLQMK120
STIKNEFAEV  RDDLTDLYKM  FGNQIHFQWI  KQRVQRMEVN  WIAAGQAFAA  KFKTKRKKKK180
VLLHMGLLAD  ESGWKLGKGA  FKGSPLGELV  QWADVMTSLF  VMGHDIAVSL  STRDLGRIFG240
KNCPPRETVV  DIIYIDILGM  RMLRNNFNNK  FHLIQCKLRP  VDSFGTEPEF  NNPAYAARKG300
LTTEWGMWNL  SPKQFNNMFP  HTPDNTFLGF  VIEQQVDTLE  QMDKENIALV  YGKDEHYFEG360
KSEYLGAIYD  AGLQIHGTIS  ARSSKHVPKY  VVNHGVIPGN  QLQALLGKTK  VFVGLGDPGE420
GPAALEAIAN  GAVFLNPKFA  DGSPQAIAFN  EGYKGKPTRR  RPHSQHPYAE  VFIGSPHVRM480
VDMSDVESVK  RIVTDIIQSP  DVGPYLPHEF  TWLGMIERLA  HQVEMQDFCR  KKNEVWPPLS540
AMQVIVSSQS  ETCVDSCQSR  GLVCEPAYFS  EINSKATFRK  LSINCNQFLI  PETNDEDSAY600
PAYRDNLCYL  QSNNQIFSCA  GRQTNARRLC  PCRDYLKGQV  ALCNECLLP649

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help