CAZyme3D

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Entry ID

Information for CAZyme ID: CAB1318316.1

Basic Information

GenBank IDCAB1318316.1
FamilyCBM21
Sequence Length287
UniProt IDA0A6F9A522(100,100)Download
Average pLDDT?67.48
CAZy50 ID90588
CAZy50 RepNo, AWP14762.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID861768
KingdomEukaryota
PhylumChordata
ClassActinopteri
OrderSalmoniformes
FamilySalmonidae
GenusCoregonus
SpeciesCoregonus sp. 'balchen'

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPIELGMPLY  LSNDDFCYRR  TPKSLQSLRP  CLKPCMRFKP  SAPPMQTEAD  LLNEKNGKSK60
RRVSFADHKG  LALTKVKLFS  HFDTIDIPLN  ITKLFSSSLT  LPYEEDRLVL  DFTQPSSDYL120
LFRQRLETEL  VCLEHCMLKE  KALAGTVKVK  NLSFEKSVKV  RVTFDTWKSY  TDLECQYLKD180
TYTGSDRDTF  SFEVSLPAEL  RPHKHIEFAI  CYKVNGQTYW  DGNQGRNYRI  IWSALKMDGQ240
GSFSSNQQSR  SFDLGIHFDL  YGSSRCSHGM  FPEWPSYAGY  EDIRPYY287

Predicted 3D structure by AlphaFold2 with pLDDT = 67.48 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM21(129-230)

MPIELGMPLY  LSNDDFCYRR  TPKSLQSLRP  CLKPCMRFKP  SAPPMQTEAD  LLNEKNGKSK60
RRVSFADHKG  LALTKVKLFS  HFDTIDIPLN  ITKLFSSSLT  LPYEEDRLVL  DFTQPSSDYL120
LFRQRLETEL  VCLEHCMLKE  KALAGTVKVK  NLSFEKSVKV  RVTFDTWKSY  TDLECQYLKD180
TYTGSDRDTF  SFEVSLPAEL  RPHKHIEFAI  CYKVNGQTYW  DGNQGRNYRI  IWSALKMDGQ240
GSFSSNQQSR  SFDLGIHFDL  YGSSRCSHGM  FPEWPSYAGY  EDIRPYY287

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help