CAZyme3D

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Entry ID

Information for CAZyme ID: CAA7388449.1

Basic Information

GenBank IDCAA7388449.1
FamilyCBM20, GH77
Sequence Length970
UniProt IDA0A7I8JYN4(100,100)Download
Average pLDDT?86.75
CAZy50 ID14213
CAZy50 RepNo, BBN08499.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID51605
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderAlismatales
FamilyAraceae
GenusSpirodela
SpeciesSpirodela intermedia

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVTSELPPFR  STLKTVTLVF  KIPYYTQWGQ  SLLISGSEPL  FGSWDVKRGL  LLSPVHKPDD60
LLWWGKITVA  SGFRSEYSYY  VVNDDRNVLR  WEAGRRREVI  LPEGTQEGVV  EIYDLWQAAT120
ETLFFRSAFK  NVIFAEEWCL  ESEEASEYDC  QNPQKEGSIV  IQFKISCPRI  DEGTLVYVTG180
NASELGHWNA  QNGLRLFYVG  GSVWQGECMM  RKDDFPIKYP  FCYSQNRKSG  DSLLEIGQNR240
ELKLDLTAGN  PPNFVYLSDG  SFREIPWRGA  GVAVPMFSVR  SEDDLGVGEF  LDLKLLVDWA300
VDSGFHLVQL  LPVNDTSVHG  TWWDSYPYSS  LSVFALHPLY  LRLEALSQNI  PEEVKQEIFI360
KKEELNGQSV  DYEATMATKL  FIAKKIFSLE  KETILSSSSF  LKFFSENKEW  LKPYAAFCFL420
RDFFETSDHS  QWGRFSNYSE  EKLEKILSKD  SLQYDIISFH  YYIQFHLHLQ  LSEAAEYAKK480
RKVVLKGDLP  IGVDRNSVDT  WVYPTLFRMN  TSTGAPPDFF  DKNGQNWGFP  TYNWEEMSKD540
NYAWWRARLT  QMAKYFTAYR  IDHILGFFRI  WELPEHAITG  LVGKFRPSIA  LSQDELEREG600
IWDFDRLSRP  YIRQETLQDK  FGTFWPGIIA  HFLDENPNHC  FQFKDQCNTE  KKIVAKVETG660
TGKSLWLDRK  DKILRGLIDL  LQNIVLIRDP  EDGSKFYPRF  NMEDTSSFRD  LDEHCKNVMR720
RLYHDYYFCR  QDELWRQNAL  KTLPALLNSS  DMLACGEDLG  FIPSCVYPVM  QELGLIGLRI780
QRMAAEPGVE  FGLPSNYNYM  TVCAPSCHDC  STMRAWWEED  EERRFRFYRT  VVGSNQAPPS840
RCIPELAQFI  LRQHFESPSM  WAIFPIQDLL  ALKEEYTTRP  ATEETINDPT  NPKHYWRFRV900
HVSLETLLGD  EELKGTIKDL  VKESGRSYPV  RDQVKDHEAG  GRTVHSDAEC  KKQIQNGLVK960
IPLQVNVQSE  970

Predicted 3D structure by AlphaFold2 with pLDDT = 86.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM20(16-106)+CBM20(161-244)+GH77(274-922)

MVTSELPPFR  STLKTVTLVF  KIPYYTQWGQ  SLLISGSEPL  FGSWDVKRGL  LLSPVHKPDD60
LLWWGKITVA  SGFRSEYSYY  VVNDDRNVLR  WEAGRRREVI  LPEGTQEGVV  EIYDLWQAAT120
ETLFFRSAFK  NVIFAEEWCL  ESEEASEYDC  QNPQKEGSIV  IQFKISCPRI  DEGTLVYVTG180
NASELGHWNA  QNGLRLFYVG  GSVWQGECMM  RKDDFPIKYP  FCYSQNRKSG  DSLLEIGQNR240
ELKLDLTAGN  PPNFVYLSDG  SFREIPWRGA  GVAVPMFSVR  SEDDLGVGEF  LDLKLLVDWA300
VDSGFHLVQL  LPVNDTSVHG  TWWDSYPYSS  LSVFALHPLY  LRLEALSQNI  PEEVKQEIFI360
KKEELNGQSV  DYEATMATKL  FIAKKIFSLE  KETILSSSSF  LKFFSENKEW  LKPYAAFCFL420
RDFFETSDHS  QWGRFSNYSE  EKLEKILSKD  SLQYDIISFH  YYIQFHLHLQ  LSEAAEYAKK480
RKVVLKGDLP  IGVDRNSVDT  WVYPTLFRMN  TSTGAPPDFF  DKNGQNWGFP  TYNWEEMSKD540
NYAWWRARLT  QMAKYFTAYR  IDHILGFFRI  WELPEHAITG  LVGKFRPSIA  LSQDELEREG600
IWDFDRLSRP  YIRQETLQDK  FGTFWPGIIA  HFLDENPNHC  FQFKDQCNTE  KKIVAKVETG660
TGKSLWLDRK  DKILRGLIDL  LQNIVLIRDP  EDGSKFYPRF  NMEDTSSFRD  LDEHCKNVMR720
RLYHDYYFCR  QDELWRQNAL  KTLPALLNSS  DMLACGEDLG  FIPSCVYPVM  QELGLIGLRI780
QRMAAEPGVE  FGLPSNYNYM  TVCAPSCHDC  STMRAWWEED  EERRFRFYRT  VVGSNQAPPS840
RCIPELAQFI  LRQHFESPSM  WAIFPIQDLL  ALKEEYTTRP  ATEETINDPT  NPKHYWRFRV900
HVSLETLLGD  EELKGTIKDL  VKESGRSYPV  RDQVKDHEAG  GRTVHSDAEC  KKQIQNGLVK960
IPLQVNVQSE  970

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help