CAZyme3D

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Entry ID

Information for CAZyme ID: CAA7388335.1

Basic Information

GenBank IDCAA7388335.1
FamilyGT37
Sequence Length485
UniProt IDA0A7I8JYA4(100,100)Download
Average pLDDT?88.27
CAZy50 ID61314
CAZy50 RepNo, CAA7388321.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID51605
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderAlismatales
FamilyAraceae
GenusSpirodela
SpeciesSpirodela intermedia

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSGFEARTSA  AGSDALRDKY  LDGLLAAGLY  EDSCRSRYEA  VNYRHLSPYK  PSAYLVQKLR60
EYEDRHRRCA  PHTNAYKKML  PLLTGGVAAG  TVEECKYLLW  TPFSGLGNKI  ISLTSSFLYA120
LLTERVLLID  RGRDFSKLFC  EPFPGTSWLI  PEDFPMKNLY  FNRGDPLSYG  SLVREKGIVN180
PLPSFVYAHV  VTDFAQEDAR  FFFEEDQRAL  RGVPWLLVRS  EVHYAAGLFL  NADFEPELSR240
LFPETETVFH  HLSRYLLHPS  NKAWGMITRY  YHTYLAKGKE  RLGIQIRIFN  HENSPFENVS300
TQVVNCLMKE  KLLPEIDLND  PQVVPSRWKI  MDVIVTTLHS  GYLDKIRSIY  WEHPAAGGVL360
VSVHQPSHEE  YQLMDDESHD  MKAWAEMNLL  SFSDVLVTSA  WSTFGYVGQG  LGGLKPWILL420
RPKSPALQEP  SCVRDISMEP  CFHLPPAYLC  EQKMDGKRGK  VAPYVTYCVD  VEGGLKVLAR480
NNEVQ485

Predicted 3D structure by AlphaFold2 with pLDDT = 88.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT37(9-451)

MSGFEARTSA  AGSDALRDKY  LDGLLAAGLY  EDSCRSRYEA  VNYRHLSPYK  PSAYLVQKLR60
EYEDRHRRCA  PHTNAYKKML  PLLTGGVAAG  TVEECKYLLW  TPFSGLGNKI  ISLTSSFLYA120
LLTERVLLID  RGRDFSKLFC  EPFPGTSWLI  PEDFPMKNLY  FNRGDPLSYG  SLVREKGIVN180
PLPSFVYAHV  VTDFAQEDAR  FFFEEDQRAL  RGVPWLLVRS  EVHYAAGLFL  NADFEPELSR240
LFPETETVFH  HLSRYLLHPS  NKAWGMITRY  YHTYLAKGKE  RLGIQIRIFN  HENSPFENVS300
TQVVNCLMKE  KLLPEIDLND  PQVVPSRWKI  MDVIVTTLHS  GYLDKIRSIY  WEHPAAGGVL360
VSVHQPSHEE  YQLMDDESHD  MKAWAEMNLL  SFSDVLVTSA  WSTFGYVGQG  LGGLKPWILL420
RPKSPALQEP  SCVRDISMEP  CFHLPPAYLC  EQKMDGKRGK  VAPYVTYCVD  VEGGLKVLAR480
NNEVQ485

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help