CAZyme3D

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Entry ID

Information for CAZyme ID: CAA57255.1

Basic Information

GenBank IDCAA57255.1
FamilyGH17
Sequence Length351
UniProt IDP23432(100,100)Download
Average pLDDT?92.94
CAZy50 ID128649
CAZy50 RepNo, AAD33881.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID4097
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderSolanales
FamilySolanaceae
GenusNicotiana
SpeciesNicotiana tabacum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MALWYLFNKR  SLGAAVLILV  GLLMCNIQMT  GAQSNIGVCY  GKIANNLPSE  QDVINLYKAN60
GIRKMRIYNS  DTNIFKSLNG  SNIEIILDVP  NQDLEALANS  SIANGWVQDN  IRSHFPYVKF120
KYISIGNEVS  PSNNGQYSQF  LLHAMENVYN  ALAAAGLQDK  IKVTTATYSG  LLANTYPPKD180
SIFREEFKSF  INPIIEFLAR  NNLPLLANIY  PYFGHIYNTV  DVPLSYALFN  QQGTNSTGYQ240
NLFDALLDSI  YFAVEKAGGP  NVEIIVSESG  WPSEGNSAAT  IENAQTYYRN  LVNHVKGGAG300
TPKKPGRIVE  TYLFAMFDEN  EKNGEVTEKH  FGLFYPNRTA  KYQLNFMYSD  T351

Predicted 3D structure by AlphaFold2 with pLDDT = 92.94 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(36-346)

MALWYLFNKR  SLGAAVLILV  GLLMCNIQMT  GAQSNIGVCY  GKIANNLPSE  QDVINLYKAN60
GIRKMRIYNS  DTNIFKSLNG  SNIEIILDVP  NQDLEALANS  SIANGWVQDN  IRSHFPYVKF120
KYISIGNEVS  PSNNGQYSQF  LLHAMENVYN  ALAAAGLQDK  IKVTTATYSG  LLANTYPPKD180
SIFREEFKSF  INPIIEFLAR  NNLPLLANIY  PYFGHIYNTV  DVPLSYALFN  QQGTNSTGYQ240
NLFDALLDSI  YFAVEKAGGP  NVEIIVSESG  WPSEGNSAAT  IENAQTYYRN  LVNHVKGGAG300
TPKKPGRIVE  TYLFAMFDEN  EKNGEVTEKH  FGLFYPNRTA  KYQLNFMYSD  T351

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help