CAZyme3D

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Entry ID

Information for CAZyme ID: CAA43708.1

Basic Information

GenBank IDCAA43708.1
FamilyCBM18, GH19
Sequence Length268
UniProt IDQ06209(100,100)Download
Average pLDDT?88.85
CAZy50 ID36322
CAZy50 RepNo, CAE6047466.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID138011
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBrassica
SpeciesBrassica napus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MALTKLSLVL  FLCFLGLYSE  TVKSQNCGCA  PNLCCSQFGY  CGSTDAYCGT  GCRSGPCRSP60
GGTPSPPGGG  SVGSIVTQAF  FNGIINQAGG  GCAGKNFYTR  DSFINAANTF  PNFANSVTRR120
EIATMFAHFT  HETGHFCYIE  EINGASRDYC  DENNRQYPCA  PGKGYFGRGP  IQLSWNYNYG180
ACGQSLNLNL  LGQPELVSSN  PTVAFRTGLW  FWMNSVRPVL  NQGFGATIRA  INGMECNGGN240
SGAVNARIRY  YRDYCGQLGV  DPGPNLSC268

Predicted 3D structure by AlphaFold2 with pLDDT = 88.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(24-57)+GH19(72-268)

MALTKLSLVL  FLCFLGLYSE  TVKSQNCGCA  PNLCCSQFGY  CGSTDAYCGT  GCRSGPCRSP60
GGTPSPPGGG  SVGSIVTQAF  FNGIINQAGG  GCAGKNFYTR  DSFINAANTF  PNFANSVTRR120
EIATMFAHFT  HETGHFCYIE  EINGASRDYC  DENNRQYPCA  PGKGYFGRGP  IQLSWNYNYG180
ACGQSLNLNL  LGQPELVSSN  PTVAFRTGLW  FWMNSVRPVL  NQGFGATIRA  INGMECNGGN240
SGAVNARIRY  YRDYCGQLGV  DPGPNLSC268

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help