CAZyme3D

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Entry ID

Information for CAZyme ID: CAA35945.1

Basic Information

GenBank IDCAA35945.1
FamilyCBM18, GH19
Sequence Length324
UniProt IDP24091(100,100)Download
Average pLDDT?89.71
CAZy50 ID48744
CAZy50 RepNo, ACS04172.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID4097
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderSolanales
FamilySolanaceae
GenusNicotiana
SpeciesNicotiana tabacum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLREFTALS  SLLFSLLLLS  ASAEQCGSQA  GGARCASGLC  CSKFGWCGNT  NDYCGPGNCQ60
SQCPGGPTPP  GGGDLGSIIS  SSMFDQMLKH  RNDNACQGKG  FYSYNAFINA  ARSFPGFGTS120
GDTTARKREI  AAFFAQTSHE  TTGGWATAPD  GPYAWGYCWL  REQGSPGDYC  TPSGQWPCAP180
GRKYFGRGPI  QISHNYNYGP  CGRAIGVDLL  NNPDLVATDP  VISFKSALWF  WMTPQSPKPS240
CHDVIIGRWQ  PSSADRAANR  LPGFGVITNI  INGGLECGRG  TDSRVQDRIG  FYRRYCSILG300
VSPGDNLDCG  NQRSFGNGLL  VDTM324

Predicted 3D structure by AlphaFold2 with pLDDT = 89.71 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(25-63)+GH19(77-309)

MRLREFTALS  SLLFSLLLLS  ASAEQCGSQA  GGARCASGLC  CSKFGWCGNT  NDYCGPGNCQ60
SQCPGGPTPP  GGGDLGSIIS  SSMFDQMLKH  RNDNACQGKG  FYSYNAFINA  ARSFPGFGTS120
GDTTARKREI  AAFFAQTSHE  TTGGWATAPD  GPYAWGYCWL  REQGSPGDYC  TPSGQWPCAP180
GRKYFGRGPI  QISHNYNYGP  CGRAIGVDLL  NNPDLVATDP  VISFKSALWF  WMTPQSPKPS240
CHDVIIGRWQ  PSSADRAANR  LPGFGVITNI  INGGLECGRG  TDSRVQDRIG  FYRRYCSILG300
VSPGDNLDCG  NQRSFGNGLL  VDTM324

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help