CAZyme3D

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Entry ID

Information for CAZyme ID: CAA2628176.1

Basic Information

GenBank IDCAA2628176.1
FamilyGT77
Sequence Length412
UniProt IDA0A7I8JBE5(100,100)Download
Average pLDDT?82.16
CAZy50 ID11973
CAZy50 RepNo, CAE5964185.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID51605
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderAlismatales
FamilyAraceae
GenusSpirodela
SpeciesSpirodela intermedia

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MASRGTPLMR  GSGSSAPWSR  GSRIAVAIGI  GVLVGCVFAF  LYPDGIFPSN  PAHLQGRRNI60
ESVLLATPPR  RSHAKVELVV  ALEENAKLKT  QVRELSTTLK  QAEQGKDQLE  KQVMVLGDTH120
KAGPLVPLAK  LLEEVAVKKE  LIVCLANTNV  KDMLGVWFEN  IKKVGIKNYL  VVALDDYIEK180
FCKTNNVPVY  RRNPDEGVDS  IAKTGGNHAV  SGLKFRILRE  FLQLGYSILL  SDVDIVYLQN240
PFDHLYRDSD  VESMSDGHSN  MTAYGFNDVF  DEPSMGWARY  AHTMRIWVFN  SGFFYIRPTI300
PSIELLDRVA  DRLAKERNSW  DQAVFNEELF  FPSHPGYDGL  HASKRTMDIY  LFMNSKVLFK360
RVRKDEDLSK  IKPVIVHVNY  HPDKLPRMKA  VVEYYVNGNK  DALKPFPDGS  VQ412

Predicted 3D structure by AlphaFold2 with pLDDT = 82.16 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT77(166-386)

MASRGTPLMR  GSGSSAPWSR  GSRIAVAIGI  GVLVGCVFAF  LYPDGIFPSN  PAHLQGRRNI60
ESVLLATPPR  RSHAKVELVV  ALEENAKLKT  QVRELSTTLK  QAEQGKDQLE  KQVMVLGDTH120
KAGPLVPLAK  LLEEVAVKKE  LIVCLANTNV  KDMLGVWFEN  IKKVGIKNYL  VVALDDYIEK180
FCKTNNVPVY  RRNPDEGVDS  IAKTGGNHAV  SGLKFRILRE  FLQLGYSILL  SDVDIVYLQN240
PFDHLYRDSD  VESMSDGHSN  MTAYGFNDVF  DEPSMGWARY  AHTMRIWVFN  SGFFYIRPTI300
PSIELLDRVA  DRLAKERNSW  DQAVFNEELF  FPSHPGYDGL  HASKRTMDIY  LFMNSKVLFK360
RVRKDEDLSK  IKPVIVHVNY  HPDKLPRMKA  VVEYYVNGNK  DALKPFPDGS  VQ412

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help