CAZyme3D

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Entry ID

Information for CAZyme ID: CAA04513.1

Basic Information

GenBank IDCAA04513.1
FamilyGH2
Sequence Length531
UniProt IDQ56307(100,100)Download
Average pLDDT?95.72
CAZy50 ID10696
CAZy50 RepNo, AEH51687.1
Structure Cluster-
EC Number(s)3.2.1.23
Substrates(s)beta-galactan

Taxonomy

Tax ID243274
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusThermotoga
SpeciesThermotoga maritima

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

EFWAYGGDFG  DTPNDGNFCI  NGVVLPDRTP  EPELYEVKKV  YQNVKIRQVS  KDTYEVENRY60
LFTNLEMFDG  AWKIRKDGEV  IEEKTFKIFA  EPGEKRLLKI  PLPEMDDSEY  FLEISFSLSE120
DTPWAEKGHV  VAWEQFLLKA  PAFEKKSISD  GVSLREDGKH  LTVEAKDTVY  VFSKLTGLLE180
QILHRRKKIL  KSPVVPNFWR  VPTDNDIGNR  MPQRLAIWKR  ASKERKLFKM  HWKKEENRVS240
VHSVFQLPGN  SWVYTTYTVF  GNGDVLVDLS  LIPAEDVPEI  PRIGFQFTVP  EEFGTVEWYG300
RGPHETYWDR  KESGLFARYR  KAVGEMMHRY  VRPQETGNRS  DVRWFALSDG  ETKLFVSGMP360
QIDFSVWPFS  MEDLERVQHI  SELPERDFVT  VNVDFRQMGL  GGDDSWGAMP  HLEYRLLPKP420
YRFSFRMRIS  EEIPSWRVLA  AIPETLHVEM  SSEDVIREGD  TLRVKFSLLN  DTPLSKEKQV480
VLFVDGNEYS  VRRVVIPPFK  KEELVFKVEG  LKKGEHLIHT  NLNTRKTIYV  R531

Predicted 3D structure by AlphaFold2 with pLDDT = 95.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(3-316)

MPYEWENPQL  VSEGTEKSHA  SFIPYLDPFS  GEWEYPEEFI  SLNGNWRFLF  AKNPFEVPED60
FFSEKFDDSN  WDEIEVPSNW  EMKGYGKPIY  TNVVYPFEPN  PPFVPKDDNP  TGVYRRWIEI120
PEDWFKKEIF  LHFEGVRSFF  YLWVNGKKIG  FSKDSCTPAE  FRLTDVLRPG  KNLITVEVLK180
WSDGSYLEDQ  DMWWFAGIYR  DVYLYALPKF  HIRDVFVRTD  LDENYRNGKI  FLDVEMRNLG240
EEEEKDLEVT  LITPDGDEKT  LVKETVKPED  RVLSFAFDVK  DPKKWSAETP  HLYVLKLKLG300
EDEKKVNFGF  RKIEIKDGTL  LFNGKPLYIK  GVNRHEFDPD  RGHAVTVERM  IQDIKLMKQH360
NINTVRTSHY  PNQTKWYDLC  DYFGLYVIDE  ANIESHGIDW  DPEVTLANRW  EWEKAHFDRI420
KRMVERDKNH  PSIIFWSLGN  EAGDGVNFEK  AALWIKKRDN  TRLIHYEGTT  RRGESYYVDV480
FSLMYPKMDI  LLEYASKKRE  KPFIMCEYAH  AMGNSVGNLK  DYWDVIEKYP  YLHGGCIWDW540
VDQGIRKKDE  NGREFWAYGG  DFGDTPNDGN  FCINGVVLPD  RTPEPELYEV  KKVYQNVKIR600
QVSKDTYEVE  NRYLFTNLEM  FDGAWKIRKD  GEVIEEKTFK  IFAEPGEKRL  LKIPLPEMDD660
SEYFLEISFS  LSEDTPWAEK  GHVVAWEQFL  LKAPAFEKKS  ISDGVSLRED  GKHLTVEAKD720
TVYVFSKLTG  LLEQILHRRK  KILKSPVVPN  FWRVPTDNDI  GNRMPQRLAI  WKRASKERKL780
FKMHWKKEEN  RVSVHSVFQL  PGNSWVYTTY  TVFGNGDVLV  DLSLIPAEDV  PEIPRIGFQF840
TVPEEFGTVE  WYGRGPHETY  WDRKESGLFA  RYRKAVGEMM  HRYVRPQETG  NRSDVRWFAL900
SDGETKLFVS  GMPQIDFSVW  PFSMEDLERV  QHISELPERD  FVTVNVDFRQ  MGLGGDDSWG960
AMPHLEYRLL  PKPYRFSFRM  RISEEIPSWR  VLAAIPETLH  VEMSSEDVIR  EGDTLRVKFS1020
LLNDTPLSKE  KQVVLFVDGN  EYSVRRVVIP  PFKKEELVFK  VEGLKKGEHL  IHTNLNTRKT1080
IYVR1084

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help