CAZyme3D

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Entry ID

Information for CAZyme ID: BCL42729.1

Basic Information

GenBank IDBCL42729.1
FamilyGT112
Sequence Length389
UniProt IDA0A7U3R2H5(100,100)Download
Average pLDDT?96.77
CAZy50 ID36924
CAZy50 RepNo, BAM89986.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1812935
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEnterobacter
SpeciesEnterobacter roggenkampii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSANFPNPPE  LPSCSGPDGI  LYDFNYGARV  LLPEGKWHVI  LMDDDSGNIL  FSCDSEGGWV60
TSNKKYYVRF  RIQVFHQGSA  SPVLDETLDM  KDKPVVIFFP  TGTLGDMLGW  FHYAERFRQL120
HRCQLECVMG  QEIIELLSAQ  YPEITFSTKD  NLQTVNPYAS  WYVGLFFKGD  TTHQPIDFRK180
VGFHRNAGYI  LGVDPRECPP  RLKLDAERKI  AEPYVCIAAQ  STNQAKYWNN  GHGWAEVVAH240
LKSLGYRVLC  IDRHAHYGQG  FVWNHIPQGA  EDFTGNIPLQ  ERVDLLKHAS  FFIGLGSGLS300
WLAWASGIPV  VLISGFSLPN  SEFYTPWRVF  SSHGCNGCWD  DTSVDFDHVD  YLWCPHHKNT360
PRQYECTSLI  TGRQVIGMVD  RLHSGLVDK389

Predicted 3D structure by AlphaFold2 with pLDDT = 96.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(12-380)

MSANFPNPPE  LPSCSGPDGI  LYDFNYGARV  LLPEGKWHVI  LMDDDSGNIL  FSCDSEGGWV60
TSNKKYYVRF  RIQVFHQGSA  SPVLDETLDM  KDKPVVIFFP  TGTLGDMLGW  FHYAERFRQL120
HRCQLECVMG  QEIIELLSAQ  YPEITFSTKD  NLQTVNPYAS  WYVGLFFKGD  TTHQPIDFRK180
VGFHRNAGYI  LGVDPRECPP  RLKLDAERKI  AEPYVCIAAQ  STNQAKYWNN  GHGWAEVVAH240
LKSLGYRVLC  IDRHAHYGQG  FVWNHIPQGA  EDFTGNIPLQ  ERVDLLKHAS  FFIGLGSGLS300
WLAWASGIPV  VLISGFSLPN  SEFYTPWRVF  SSHGCNGCWD  DTSVDFDHVD  YLWCPHHKNT360
PRQYECTSLI  TGRQVIGMVD  RLHSGLVDK389

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help