CAZyme3D

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Entry ID

Information for CAZyme ID: BCH28655.1

Basic Information

GenBank IDBCH28655.1
FamilyGT51
Sequence Length740
UniProt IDA0A7R7CCJ3(100,100)Download
Average pLDDT?79.22
CAZy50 ID16925
CAZy50 RepNo, BCP55952.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2744523
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyPhyllobacteriaceae
GenusMesorhizobium
SpeciesMesorhizobium sp. L-8-10

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSIGDDMADR  NRRIEPTFDA  PLRDGSSGLS  VSEEDRVVPA  SRKRGPARKK  SSARASKSRK60
TPRRKRRSSL  GIIARLAYWC  VVFSIWGGIA  AAGIVVYYGA  KMPSATTWAI  PDRPPNVRIV120
SVDDKLIANR  GMTGGEAIGL  HEMSPYIPKA  VIAIEDHRFY  SHFGFDPIGL  ARAMVGNIMA180
GRLTQGGSTL  TQQLAKNLFL  KPDRTIERKV  QEVLLALWLE  QNHTKDQILE  MYLNRVYFGS240
GSYGVEAASR  RYFGKSARDV  TLSEAALLAG  LLKAPSRLSP  ARDPKAADER  AQLVLGAMRE300
EGLIGEKELK  VAMAAPATRA  AAFWTGSENY  VADRIMEELP  GLIGEVRTDV  VVETTIDLHL360
QKLAEDSIRR  LIGESGKKLG  VSQGALVSID  NTGAVRAMVG  GVDYATSQFD  RASEARRQPG420
SAFKPFVFLA  ALEQGRTPRS  VRNDAPIRIG  KWTPENHQGK  YYGRVTLATA  LAKSLNSVAA480
QLAMEVGPDA  VVEAAHRMGI  ESALQSNTSI  ALGTSEVTPL  ELTAAYVPFA  NGGYRPEVHF540
VQRVRTANGE  VLYQNSVGSM  PRVLRPEIVG  MMNAMMTQTV  EAGTGRKAAF  GWPAAGKTGT600
SQKSRDAWFI  GYTANLTTGV  WFGNDDGKPT  KNITGGSLPT  QAWHEFMLAA  HEGVPVARLP660
GGWNPDPAFD  ASPVPAAEVG  AEAPLRRPRP  VESVEAAGGF  SPPHPDDSST  ASIRRPSADV720
GGPRQKRPGS  ILDVILGNGG  740

Predicted 3D structure by AlphaFold2 with pLDDT = 79.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(134-298)

MSIGDDMADR  NRRIEPTFDA  PLRDGSSGLS  VSEEDRVVPA  SRKRGPARKK  SSARASKSRK60
TPRRKRRSSL  GIIARLAYWC  VVFSIWGGIA  AAGIVVYYGA  KMPSATTWAI  PDRPPNVRIV120
SVDDKLIANR  GMTGGEAIGL  HEMSPYIPKA  VIAIEDHRFY  SHFGFDPIGL  ARAMVGNIMA180
GRLTQGGSTL  TQQLAKNLFL  KPDRTIERKV  QEVLLALWLE  QNHTKDQILE  MYLNRVYFGS240
GSYGVEAASR  RYFGKSARDV  TLSEAALLAG  LLKAPSRLSP  ARDPKAADER  AQLVLGAMRE300
EGLIGEKELK  VAMAAPATRA  AAFWTGSENY  VADRIMEELP  GLIGEVRTDV  VVETTIDLHL360
QKLAEDSIRR  LIGESGKKLG  VSQGALVSID  NTGAVRAMVG  GVDYATSQFD  RASEARRQPG420
SAFKPFVFLA  ALEQGRTPRS  VRNDAPIRIG  KWTPENHQGK  YYGRVTLATA  LAKSLNSVAA480
QLAMEVGPDA  VVEAAHRMGI  ESALQSNTSI  ALGTSEVTPL  ELTAAYVPFA  NGGYRPEVHF540
VQRVRTANGE  VLYQNSVGSM  PRVLRPEIVG  MMNAMMTQTV  EAGTGRKAAF  GWPAAGKTGT600
SQKSRDAWFI  GYTANLTTGV  WFGNDDGKPT  KNITGGSLPT  QAWHEFMLAA  HEGVPVARLP660
GGWNPDPAFD  ASPVPAAEVG  AEAPLRRPRP  VESVEAAGGF  SPPHPDDSST  ASIRRPSADV720
GGPRQKRPGS  ILDVILGNGG  740

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help