CAZyme3D

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Entry ID

Information for CAZyme ID: BCE84187.1

Basic Information

GenBank IDBCE84187.1
FamilyGH50
Sequence Length216
UniProt IDA0A810C6L0(100,100)Download
Average pLDDT?92.68
CAZy50 ID70317
CAZy50 RepNo, QOZ62087.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1355477
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium diazoefficiens

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAPFVRMPPG  GLNDALETKA  NLADRAREAF  SADCDAFVAV  VADKYFEVCV  SAIKTADPHH60
LVIGSRFGWQ  PPRGVIAAAG  RHLDVISFNC  YEFDPGPVID  AYAATGKPCL  ISEFSFRGDD120
AGLPNSKGAG  PRVATQTERA  RAFQGYVVAA  LGKPNVVGYH  WFEHADQPVQ  GRFDGEDSNF180
GTVTVDDRVY  DELTKTMTRV  NAAAERIHAA  AVPAVI216

Predicted 3D structure by AlphaFold2 with pLDDT = 92.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MAPFVRMPPG  GLNDALETKA  NLADRAREAF  SADCDAFVAV  VADKYFEVCV  SAIKTADPHH60
LVIGSRFGWQ  PPRGVIAAAG  RHLDVISFNC  YEFDPGPVID  AYAATGKPCL  ISEFSFRGDD120
AGLPNSKGAG  PRVATQTERA  RAFQGYVVAA  LGKPNVVGYH  WFEHADQPVQ  GRFDGEDSNF180
GTVTVDDRVY  DELTKTMTRV  NAAAERIHAA  AVPAVI216

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help