CAZyme3D

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Entry ID

Information for CAZyme ID: BCB91458.1

Basic Information

GenBank IDBCB91458.1
FamilyCBM2, GH5_8
Sequence Length466
UniProt IDA0A6F8YZU6(100,100)Download
Average pLDDT?88.52
CAZy50 ID31500
CAZy50 RepNo, ANN17163.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID624315
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicromonosporales
FamilyMicromonosporaceae
GenusPhytohabitans
SpeciesPhytohabitans suffuscus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRKIAIVCA  AAIALLASVL  VFVKPADAAV  GLRVSGGRIV  EANGTNVVMR  GVSHPHVWYT60
GQTSSFANIK  ALGANTVRVV  LGSGQRWGPS  NDLSTVVNLC  RTNRLLCVLE  VHDTTGYGEE120
GAAATLDQAA  SYWIGQRSVL  AGTENFIVIN  IGNEPFGNNA  SVSATWPTAT  SNAVSRLRGA180
GFEHLIMVDA  PMWGQDWQFI  MRDNAQTVFN  ADPQRNTVFS  IHMYGVFDTA  AEIQDYLGRF240
RTAGLPIVVG  EFGHNHSDGN  PDEDTIMSYT  QTNGIGYIGW  SWSGNGGGVE  YLDMVTNFNP300
AQLTSWGQRI  FNGANGIRQT  SRELSWFGGN  PTTSPTTRPP  TTPPTTAPTT  PPTTPPTSRP360
TTPPPGGRTC  AAAYSVIGQW  QGGFQGEVRV  TAGSSAISGW  TVTWAFPSGQ  TVTQSWNATI420
TSSGANVTAR  NVSYNGSLGA  GATTAFGFIG  SWNGTNTNPT  LTCAAT466

Predicted 3D structure by AlphaFold2 with pLDDT = 88.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_8(41-289)+CBM2(370-464)

MKRKIAIVCA  AAIALLASVL  VFVKPADAAV  GLRVSGGRIV  EANGTNVVMR  GVSHPHVWYT60
GQTSSFANIK  ALGANTVRVV  LGSGQRWGPS  NDLSTVVNLC  RTNRLLCVLE  VHDTTGYGEE120
GAAATLDQAA  SYWIGQRSVL  AGTENFIVIN  IGNEPFGNNA  SVSATWPTAT  SNAVSRLRGA180
GFEHLIMVDA  PMWGQDWQFI  MRDNAQTVFN  ADPQRNTVFS  IHMYGVFDTA  AEIQDYLGRF240
RTAGLPIVVG  EFGHNHSDGN  PDEDTIMSYT  QTNGIGYIGW  SWSGNGGGVE  YLDMVTNFNP300
AQLTSWGQRI  FNGANGIRQT  SRELSWFGGN  PTTSPTTRPP  TTPPTTAPTT  PPTTPPTSRP360
TTPPPGGRTC  AAAYSVIGQW  QGGFQGEVRV  TAGSSAISGW  TVTWAFPSGQ  TVTQSWNATI420
TSSGANVTAR  NVSYNGSLGA  GATTAFGFIG  SWNGTNTNPT  LTCAAT466

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help