CAZyme3D

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Entry ID

Information for CAZyme ID: BCA96729.1

Basic Information

GenBank IDBCA96729.1
FamilyGH5
Sequence Length491
UniProt IDA0A6F8T8D6(100,100)Download
Average pLDDT?92.67
CAZy50 ID60866
CAZy50 RepNo, AHE67114.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2708020
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLegionellales
FamilyLegionellaceae
GenusLegionella
SpeciesLegionella antarctica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIKTIPLISL  IPGVALATIL  TNNIEGVGPK  GILKPYVCIQ  KSQLKLAPDS  SVDVGTVSYA60
GAALRFNGCD  VSNTYLGWMN  LNLSKEGNTI  ISYLPPEGIH  IQYSNPGIDN  KGRISGSIAY120
TPIEINEDLV  RAQPATNWQF  AGINLSGLEF  GKVIDPAVVP  NLSILDQNSP  YSDLKDTVFF180
IEAGMNTVRI  PVSWGYLQLD  GPGTGSINRD  YYVNYIKPLL  QTLTKAKVHA  VVDLHAYMRY240
SKFGEQYSGC  FGDASCPDGD  LILDEKAYQS  AWGQLVTLIQ  EDISIDKEYI  VIDLMNEPVA300
VPDDKVFTIQ  VALIKMLRAQ  QFKGTILIEG  NNWTGLHSWT  TGEWTGGDGK  VYTNASLFTR360
ENFAKSGITD  LDNIVINVHQ  YLDSDYSGTH  DTCQQDLKTE  GPDGFNLDAF  TQYLEKNRLK420
AMVTEFGTGN  NASSCSQPLN  EFMQYMQDNA  IKDKDFGFVG  WTIWSTGHGW  GGYNFRVKPD480
SYQMHVLNQY  L491

Predicted 3D structure by AlphaFold2 with pLDDT = 92.67 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(140-473)

MIKTIPLISL  IPGVALATIL  TNNIEGVGPK  GILKPYVCIQ  KSQLKLAPDS  SVDVGTVSYA60
GAALRFNGCD  VSNTYLGWMN  LNLSKEGNTI  ISYLPPEGIH  IQYSNPGIDN  KGRISGSIAY120
TPIEINEDLV  RAQPATNWQF  AGINLSGLEF  GKVIDPAVVP  NLSILDQNSP  YSDLKDTVFF180
IEAGMNTVRI  PVSWGYLQLD  GPGTGSINRD  YYVNYIKPLL  QTLTKAKVHA  VVDLHAYMRY240
SKFGEQYSGC  FGDASCPDGD  LILDEKAYQS  AWGQLVTLIQ  EDISIDKEYI  VIDLMNEPVA300
VPDDKVFTIQ  VALIKMLRAQ  QFKGTILIEG  NNWTGLHSWT  TGEWTGGDGK  VYTNASLFTR360
ENFAKSGITD  LDNIVINVHQ  YLDSDYSGTH  DTCQQDLKTE  GPDGFNLDAF  TQYLEKNRLK420
AMVTEFGTGN  NASSCSQPLN  EFMQYMQDNA  IKDKDFGFVG  WTIWSTGHGW  GGYNFRVKPD480
SYQMHVLNQY  L491

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help