CAZyme3D

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Entry ID

Information for CAZyme ID: BCA27903.1

Basic Information

GenBank IDBCA27903.1
FamilyPL7_1
Sequence Length228
UniProt IDA0A679GCA2(100,100)Download
Average pLDDT?96.29
CAZy50 ID175444
CAZy50 RepNo, AOX27632.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID319939
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas otitidis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIDLSTWQLD  IPTHTSATEI  STQRLNNGYE  SQYFRRNRDG  SVTFWVPVTG  SRSEDARYPR60
SELRETQADG  TLSYWYYASA  DNYLSAVLTV  QQVPSRNKVI  IGQIHSKDEA  GSENDPLLKL120
QYHFKDGNGR  IEALLRKRPG  DAEVENIVLV  EHVDLGERFG  YDLRLTPTGR  LGITVSSKGD180
DGGLYRQLSG  YWSKQQLYFK  AGAYIQDNYG  PSNEGGRVTF  HWLNSLHR228

Predicted 3D structure by AlphaFold2 with pLDDT = 96.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL7_1(2-227)

MIDLSTWQLD  IPTHTSATEI  STQRLNNGYE  SQYFRRNRDG  SVTFWVPVTG  SRSEDARYPR60
SELRETQADG  TLSYWYYASA  DNYLSAVLTV  QQVPSRNKVI  IGQIHSKDEA  GSENDPLLKL120
QYHFKDGNGR  IEALLRKRPG  DAEVENIVLV  EHVDLGERFG  YDLRLTPTGR  LGITVSSKGD180
DGGLYRQLSG  YWSKQQLYFK  AGAYIQDNYG  PSNEGGRVTF  HWLNSLHR228

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help