CAZyme3D

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Entry ID

Information for CAZyme ID: BBU69458.1

Basic Information

GenBank IDBBU69458.1
FamilyGT112
Sequence Length421
UniProt IDA0A679I5Y6(100,100)Download
Average pLDDT?91.46
CAZy50 ID36924
CAZy50 RepNo, BAM89986.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1751046
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderRhodocyclales
FamilyFluviibacteraceae
GenusFluviibacter
SpeciesFluviibacter phosphoraccumulans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNNDQQNHTH  VATSEKVSAD  SDSSATVASE  KMFLDPPILP  TQEGPEGIRY  DFNYGCRVHV60
PALPEGKGWR  IRLSDTLTGN  VVFESVLQGG  SVESSKKFFI  PFKLECWIGE  RIVFTHEIDL120
QGKDVLVQIP  VGTLGDGIAW  FPYVDAFQKQ  HDCSVSCTIS  KPLKALFESK  YPNIRLIEKS180
EPVNQSHFYA  GYRMGLYFDD  WDCIHQPVDF  RYVGLHKTAA  HILGVPAIEE  PPKIAYSTES240
RQIKEPYVCI  GVQSSTQCKY  WNNPYGWLDL  VAWLKSLGYR  VLCIDKDRAW  GQSTTWNYIP300
HGADDFTGDI  PLAERASLLK  YADFYVGLSS  GLAWLAWAAG  TPVVMISGFT  HPNNEFHTPY360
RVFNYHTCNS  CWNDPKVMFD  HHDFLWCPRH  KGTERQFECT  RLVTVDHVKS  IIEKIPALTK420
L421

Predicted 3D structure by AlphaFold2 with pLDDT = 91.46 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT112(40-413)

MNNDQQNHTH  VATSEKVSAD  SDSSATVASE  KMFLDPPILP  TQEGPEGIRY  DFNYGCRVHV60
PALPEGKGWR  IRLSDTLTGN  VVFESVLQGG  SVESSKKFFI  PFKLECWIGE  RIVFTHEIDL120
QGKDVLVQIP  VGTLGDGIAW  FPYVDAFQKQ  HDCSVSCTIS  KPLKALFESK  YPNIRLIEKS180
EPVNQSHFYA  GYRMGLYFDD  WDCIHQPVDF  RYVGLHKTAA  HILGVPAIEE  PPKIAYSTES240
RQIKEPYVCI  GVQSSTQCKY  WNNPYGWLDL  VAWLKSLGYR  VLCIDKDRAW  GQSTTWNYIP300
HGADDFTGDI  PLAERASLLK  YADFYVGLSS  GLAWLAWAAG  TPVVMISGFT  HPNNEFHTPY360
RVFNYHTCNS  CWNDPKVMFD  HHDFLWCPRH  KGTERQFECT  RLVTVDHVKS  IIEKIPALTK420
L421

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help