CAZyme3D

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Entry ID

Information for CAZyme ID: BBR57322.1

Basic Information

GenBank IDBBR57322.1
FamilyGT108
Sequence Length303
UniProt IDA0A7I6RSR3(100,100)Download
Average pLDDT?95.58
CAZy50 ID150898
CAZy50 RepNo, AYN28796.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2675713
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusKlebsiella
SpeciesKlebsiella sp. WP4-W18-ESBL-05

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRDNVDDLYQ  HYRARPQTGR  RGKIRFSGVD  GLDVYNPTAP  FSDGERWCIA  ARTEARDSEA60
SQVRFFAWDG  LNAAALLDDM  PTYALQDPFV  GRIGGHLLFG  GVEVAFMPEG  EVCWRTQFFA120
GPCISALRPV  ATGPWGMKDI  RPVELPDGRL  LVFTRPQGEP  GGRGTIGWVL  LSRLEDLNAQ180
TLANATLIDH  VDPLCWCGVN  EARVLPDGRV  GALAHVARYD  EQGNRHYYAA  RFLFDYQQGV240
SSPMAIIACR  DDFLPGEGKR  DDLRDVVFPG  GLLESETGET  RLFCGTSDCE  VQWLDIASPF300
SGE303

Predicted 3D structure by AlphaFold2 with pLDDT = 95.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT108(17-300)

MRDNVDDLYQ  HYRARPQTGR  RGKIRFSGVD  GLDVYNPTAP  FSDGERWCIA  ARTEARDSEA60
SQVRFFAWDG  LNAAALLDDM  PTYALQDPFV  GRIGGHLLFG  GVEVAFMPEG  EVCWRTQFFA120
GPCISALRPV  ATGPWGMKDI  RPVELPDGRL  LVFTRPQGEP  GGRGTIGWVL  LSRLEDLNAQ180
TLANATLIDH  VDPLCWCGVN  EARVLPDGRV  GALAHVARYD  EQGNRHYYAA  RFLFDYQQGV240
SSPMAIIACR  DDFLPGEGKR  DDLRDVVFPG  GLLESETGET  RLFCGTSDCE  VQWLDIASPF300
SGE303

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help