CAZyme3D

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Entry ID

Information for CAZyme ID: BBN68241.1

Basic Information

GenBank IDBBN68241.1
FamilyGH17
Sequence Length291
UniProt IDA0A5H2XW75(100,100)Download
Average pLDDT?90.87
CAZy50 ID47879
CAZy50 RepNo, BAF07303.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3755
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderRosales
FamilyRosaceae
GenusPrunus
SpeciesPrunus dulcis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAKTVGDNLP  PPREVIALYK  QYNIQRMRLY  TPNFDALQAL  QGSPVELILG  VENERLKDIS60
SSQASADDWV  KKNVQSHGNV  NFKYIAVGNE  VDAAGLANKI  EVSTAVYPVI  LGISYPPSEG120
SFRQDYYRPF  LDPIISFLVR  NKSPLLFNMY  PYFSYISHRK  DIKLEYALFT  SPSVVVNDGS180
LGYQNLFDAL  LDAAYSALEK  AGGGSLKIVV  SETGWPSAGG  DGTVTTKENA  RIYNSNLIKH240
VKGGTPKRPG  VPLETYMFAM  FNENKKPGEE  TERHWGLFFP  NKQPVYHIDF  N291

Predicted 3D structure by AlphaFold2 with pLDDT = 90.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(93-290)

MAKTVGDNLP  PPREVIALYK  QYNIQRMRLY  TPNFDALQAL  QGSPVELILG  VENERLKDIS60
SSQASADDWV  KKNVQSHGNV  NFKYIAVGNE  VDAAGLANKI  EVSTAVYPVI  LGISYPPSEG120
SFRQDYYRPF  LDPIISFLVR  NKSPLLFNMY  PYFSYISHRK  DIKLEYALFT  SPSVVVNDGS180
LGYQNLFDAL  LDAAYSALEK  AGGGSLKIVV  SETGWPSAGG  DGTVTTKENA  RIYNSNLIKH240
VKGGTPKRPG  VPLETYMFAM  FNENKKPGEE  TERHWGLFFP  NKQPVYHIDF  N291

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help