CAZyme3D

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Entry ID

Information for CAZyme ID: BBM72370.1

Basic Information

GenBank IDBBM72370.1
FamilyPL39
Sequence Length891
UniProt IDA0A5S9C8K1(100,100)Download
Average pLDDT?91.56
CAZy50 ID18108
CAZy50 RepNo, ARA94931.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID29549
KingdomBacteria
PhylumRhodothermota
ClassRhodothermia
OrderRhodothermales
FamilyRhodothermaceae
GenusRhodothermus
SpeciesRhodothermus marinus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGTPHLQPGS  AGRSRRFPPG  ILALAAWLLV  GSVASAQNPY  ETYTGFTVPT  EAVLPDSEVH60
PSLWFSAEEL  ATIRARWQDP  AYAELVDEIK  RDIRDFKNRN  PEATDPGERA  RMAKTLAFAW120
LMENDIVALV  KALATLDVAY  DNVPQRYGSD  VFDGEYDEIY  RATWLQNYCA  AYDWLYDQLG180
PELEAELRAK  LVAEAQLLYT  YMNQYAPRPH  NHRSKPAYAL  GTAALTLSSH  PDAAKWLSFA240
LDRQNSVTKY  MFSNEGVYRE  GPHYYVFTLV  NAIPFLWHYL  HVSGVNLFPY  YQPAFEWPIR300
IRNSRGWMPN  IEDGYMKPAP  THTVAAAYRN  TPTLLHSSAP  LAEILQWNWQ  TTRFFTQNYT360
GATNDVTWEI  DVLLSWDASI  PATPPDVSPT  QILQSGQVAF  RNAWTDEGAA  SRYLLFHGVA420
SADNHDHPDH  LSYVVDAANT  PLAVDAGYGP  EGFSDDRRSW  YTSPQAHNTV  TVNGYPLVDY480
STARNEGPRL  RHALDTPFYD  FAEMQARSQG  VAGGAEVRRG  IAFPEERFWV  VYDLGSSDNE540
ASYQVHLHGR  GTFARNGSWL  TWTAQPDTYG  EGARLHAAFA  GNRTLTISEN  SGWTSLYWGH600
EETQTYVSVR  QTATDPVFLH  VLYPTPLDGT  PPALVDRSSS  GIVSLELTED  AGITNVAVQR660
DQVLRTAGPL  ATDAIFAWTR  RVQGSIVQFA  LTEGRELRWE  GRLLLSASDT  LTVAVDRSDP720
SRQLLYVEPF  TGQAELTLRL  LPDSATPLSV  MLDGQPLAFE  TPEQGTVRFR  LSGDQLGAGS780
VIVVTTNVAS  AAEPHEAATA  GFMIEGPYPN  PTSGPMHFRL  VLARPAHVRA  VLYDVLGRRL840
ATLWDGAVGA  GQTELTWDVG  RLLRQKLTPG  PYLIKVEADG  VRRVVRGLVS  R891

Predicted 3D structure by AlphaFold2 with pLDDT = 91.56 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL39(42-766)

MGTPHLQPGS  AGRSRRFPPG  ILALAAWLLV  GSVASAQNPY  ETYTGFTVPT  EAVLPDSEVH60
PSLWFSAEEL  ATIRARWQDP  AYAELVDEIK  RDIRDFKNRN  PEATDPGERA  RMAKTLAFAW120
LMENDIVALV  KALATLDVAY  DNVPQRYGSD  VFDGEYDEIY  RATWLQNYCA  AYDWLYDQLG180
PELEAELRAK  LVAEAQLLYT  YMNQYAPRPH  NHRSKPAYAL  GTAALTLSSH  PDAAKWLSFA240
LDRQNSVTKY  MFSNEGVYRE  GPHYYVFTLV  NAIPFLWHYL  HVSGVNLFPY  YQPAFEWPIR300
IRNSRGWMPN  IEDGYMKPAP  THTVAAAYRN  TPTLLHSSAP  LAEILQWNWQ  TTRFFTQNYT360
GATNDVTWEI  DVLLSWDASI  PATPPDVSPT  QILQSGQVAF  RNAWTDEGAA  SRYLLFHGVA420
SADNHDHPDH  LSYVVDAANT  PLAVDAGYGP  EGFSDDRRSW  YTSPQAHNTV  TVNGYPLVDY480
STARNEGPRL  RHALDTPFYD  FAEMQARSQG  VAGGAEVRRG  IAFPEERFWV  VYDLGSSDNE540
ASYQVHLHGR  GTFARNGSWL  TWTAQPDTYG  EGARLHAAFA  GNRTLTISEN  SGWTSLYWGH600
EETQTYVSVR  QTATDPVFLH  VLYPTPLDGT  PPALVDRSSS  GIVSLELTED  AGITNVAVQR660
DQVLRTAGPL  ATDAIFAWTR  RVQGSIVQFA  LTEGRELRWE  GRLLLSASDT  LTVAVDRSDP720
SRQLLYVEPF  TGQAELTLRL  LPDSATPLSV  MLDGQPLAFE  TPEQGTVRFR  LSGDQLGAGS780
VIVVTTNVAS  AAEPHEAATA  GFMIEGPYPN  PTSGPMHFRL  VLARPAHVRA  VLYDVLGRRL840
ATLWDGAVGA  GQTELTWDVG  RLLRQKLTPG  PYLIKVEADG  VRRVVRGLVS  R891

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help