CAZyme3D

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Entry ID

Information for CAZyme ID: BBL07145.1

Basic Information

GenBank IDBBL07145.1
FamilyGH2
Sequence Length445
UniProt IDA0A4Y1X287(100,100)Download
Average pLDDT?88.85
CAZy50 ID79235
CAZy50 RepNo, BBL11042.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2585119
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyRikenellaceae
GenusAlistipes
SpeciesAlistipes dispar

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKRTITTAAL  ALSALAAAAQ  DYGESSAVRI  DEAGRIHRTE  VIPYDTRRDA  EARNREAGGY60
YLAFSPRQMA  AAGDMAVSGA  TLDIPYAWTD  GVIYLHLENV  GSAYSLWIND  RPVAEVEDPA120
TPAEFAVSPY  IRQGANDIRL  VLRPSATPQI  NPATPRREAF  ANSYLYYQNK  RSIRDFEIAL180
VPDSTRRFGV  LELAIVAQNA  FNYDEKVTVG  YDIYSPQGKL  LDFNMREVSI  PGRSVDTVRF240
SPFIYGSYDN  EWKAGGKTPP  LYKVMLFTRR  DGVYKEYMPL  RIGFGRTELE  EGRPMRLGRE300
LQLVRASYNA  AADPETTLAE  LKALKAQGKN  TVCPDFPQPA  WFYDLCDRTG  LYVIDRAAID360
APERRDDRRV  GGTPSNDPAL  ADEYLERVRA  MYYRSRNFTC  VVAYDLGSPS  GNGYNMYKAY420
EWLRSVEPSR  PVIYGDADGE  WNTDL445

Predicted 3D structure by AlphaFold2 with pLDDT = 88.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(81-437)

MKRTITTAAL  ALSALAAAAQ  DYGESSAVRI  DEAGRIHRTE  VIPYDTRRDA  EARNREAGGY60
YLAFSPRQMA  AAGDMAVSGA  TLDIPYAWTD  GVIYLHLENV  GSAYSLWIND  RPVAEVEDPA120
TPAEFAVSPY  IRQGANDIRL  VLRPSATPQI  NPATPRREAF  ANSYLYYQNK  RSIRDFEIAL180
VPDSTRRFGV  LELAIVAQNA  FNYDEKVTVG  YDIYSPQGKL  LDFNMREVSI  PGRSVDTVRF240
SPFIYGSYDN  EWKAGGKTPP  LYKVMLFTRR  DGVYKEYMPL  RIGFGRTELE  EGRPMRLGRE300
LQLVRASYNA  AADPETTLAE  LKALKAQGKN  TVCPDFPQPA  WFYDLCDRTG  LYVIDRAAID360
APERRDDRRV  GGTPSNDPAL  ADEYLERVRA  MYYRSRNFTC  VVAYDLGSPS  GNGYNMYKAY420
EWLRSVEPSR  PVIYGDADGE  WNTDL445

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help