CAZyme3D

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Entry ID

Information for CAZyme ID: BBK85768.1

Basic Information

GenBank IDBBK85768.1
FamilyGH125
Sequence Length494
UniProt IDA0A414IKX4(100,100)Download
Average pLDDT?92.38
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID820
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides uniformis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSLNSKKICF  SLVLAAAAGM  VQAVNSSCLL  ADAGFVAVQD  NTVSAGNYTS  NRPKEKQRLF60
RSTAVEKEIV  RVQMLLKNRK  LSWMFANCFP  NTLDTTVHFR  KGSDGKPDTF  VYTGDIHAMW120
LRDSGAQVWP  YVQLANNDPK  LKEMLAGVIL  RQFKCINIDP  YANAYNDGAL  PDGHWMSDLT180
DMKPELHERK  WEIDSLCYPL  RLAYHYWQVT  GDTSVFGAEW  LEAIRNIYTT  FCQQQRKEGA240
GPYKFQRKTE  RALDTLNNDG  LGAPVRPVGL  IVSCFRPSDD  ATTLQFLVPS  NFFAVTSLRK300
AAEILETVNK  ETALAADCRA  LADEVEMALK  RYATYNHPEF  GTIYAFEVDG  FGNHLLMDDA360
NVPSLLAMPY  LGDVDVNDPI  YQNTRRFVWS  DSNPYFFCGK  AGEGIGGPHI  GYDMVWPMSI420
MMKAFTSRDD  AEIKTCIKML  MDTDAGTGFM  HESFHKDDAT  NFTRPWFAWQ  NTLFGELILK480
LVNEGKVDLL  NSID494

Predicted 3D structure by AlphaFold2 with pLDDT = 92.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(79-479)

MSLNSKKICF  SLVLAAAAGM  VQAVNSSCLL  ADAGFVAVQD  NTVSAGNYTS  NRPKEKQRLF60
RSTAVEKEIV  RVQMLLKNRK  LSWMFANCFP  NTLDTTVHFR  KGSDGKPDTF  VYTGDIHAMW120
LRDSGAQVWP  YVQLANNDPK  LKEMLAGVIL  RQFKCINIDP  YANAYNDGAL  PDGHWMSDLT180
DMKPELHERK  WEIDSLCYPL  RLAYHYWQVT  GDTSVFGAEW  LEAIRNIYTT  FCQQQRKEGA240
GPYKFQRKTE  RALDTLNNDG  LGAPVRPVGL  IVSCFRPSDD  ATTLQFLVPS  NFFAVTSLRK300
AAEILETVNK  ETALAADCRA  LADEVEMALK  RYATYNHPEF  GTIYAFEVDG  FGNHLLMDDA360
NVPSLLAMPY  LGDVDVNDPI  YQNTRRFVWS  DSNPYFFCGK  AGEGIGGPHI  GYDMVWPMSI420
MMKAFTSRDD  AEIKTCIKML  MDTDAGTGFM  HESFHKDDAT  NFTRPWFAWQ  NTLFGELILK480
LVNEGKVDLL  NSID494

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help