CAZyme3D

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Entry ID

Information for CAZyme ID: BBH09096.1

Basic Information

GenBank IDBBH09096.1
FamilyGH5_7
Sequence Length489
UniProt IDA0A4Y1RZ52(100,100)Download
Average pLDDT?83.31
CAZy50 ID61671
CAZy50 RepNo, BBG98712.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3755
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderRosales
FamilyRosaceae
GenusPrunus
SpeciesPrunus dulcis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPTKSLNYGK  RSVVEHNPYS  TTMSGKGLFV  LSTLLVLIVI  QHEVCQGEAN  HASNGGAFAR60
TEGTRFVMNG  RPFYINDFNA  YWMMYMASDP  SSRAKVTSAF  QQASRYGMKV  ARTWAFNDGR120
GTDRPLQPSP  GSYNEDTFKG  LDFVISEAKK  FGVYVILSFV  NNFSDFGGRK  QYVQWARDRG180
QPISSDDDFY  SNAVIKGYYK  DHIKTVLTRI  NSITRVAYKD  DPTIFAWELI  NEPRCQSDVS240
GALLQQWVTE  MAAHVKSIDS  EHLLEIGLEG  FYGETTPDKK  QYNPGNLEFG  SDFIATNLLP300
QIDFATIHIY  ADQWYVQNLY  LSYNMMMDRL  SGESEEAQAG  FVDRWVQAHI  QDCNTVVKKP360
LLVAEFGKSY  KLPGYVLQKR  DAYFGKIYSD  IYSSASRGGS  CVGGLFWQLM  APNMDTFGDG420
YEVVLEQSPT  TATVIAQQSR  KLNGLKASLA  INVNFLALDQ  HVSVLGCGED  LMKLVSMDVD480
YNISEFELH489

Predicted 3D structure by AlphaFold2 with pLDDT = 83.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_7(94-409)

MPTKSLNYGK  RSVVEHNPYS  TTMSGKGLFV  LSTLLVLIVI  QHEVCQGEAN  HASNGGAFAR60
TEGTRFVMNG  RPFYINDFNA  YWMMYMASDP  SSRAKVTSAF  QQASRYGMKV  ARTWAFNDGR120
GTDRPLQPSP  GSYNEDTFKG  LDFVISEAKK  FGVYVILSFV  NNFSDFGGRK  QYVQWARDRG180
QPISSDDDFY  SNAVIKGYYK  DHIKTVLTRI  NSITRVAYKD  DPTIFAWELI  NEPRCQSDVS240
GALLQQWVTE  MAAHVKSIDS  EHLLEIGLEG  FYGETTPDKK  QYNPGNLEFG  SDFIATNLLP300
QIDFATIHIY  ADQWYVQNLY  LSYNMMMDRL  SGESEEAQAG  FVDRWVQAHI  QDCNTVVKKP360
LLVAEFGKSY  KLPGYVLQKR  DAYFGKIYSD  IYSSASRGGS  CVGGLFWQLM  APNMDTFGDG420
YEVVLEQSPT  TATVIAQQSR  KLNGLKASLA  INVNFLALDQ  HVSVLGCGED  LMKLVSMDVD480
YNISEFELH489

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help