CAZyme3D

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Entry ID

Information for CAZyme ID: BBC74467.1

Basic Information

GenBank IDBBC74467.1
FamilyGT51
Sequence Length693
UniProt IDA0A2Z5Z299(100,100)Download
Average pLDDT?89.91
CAZy50 ID38913
CAZy50 RepNo, AYF99640.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1359
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusLactococcus
SpeciesLactococcus cremoris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRYSKISTKS  KKNKQNKWAK  SGSAKSKWWT  AVKLFLIVFF  SLIILGLAAG  GAVFVYYAKD60
APALNLDKLE  STPSPKVYDS  KEHLVATLGA  EQRNLVKTDN  IPVMLVNAVT  SIEDHRFFNT120
RGIDPIRIAG  AFVNNLKGGS  LNGGSTLDMQ  LIKLSFFSTD  ESDQTLSVKV  QEAWMALKLD180
QKWTKEQIFT  AYVNKVNMAN  GYYGMGTAAQ  AYYGKDLTEL  SIAQLALLAG  MPQAPNTYNP240
YTNATSAKWR  RDMVIRSMRR  YNKITAEEEK  TALATPIDDG  LQPLQQSVTI  PSYADNFLKQ300
AIAQAKTLAG  NDILNEGVKI  YTILDTTAQQ  NLYNIVNSGN  YITYPDDTLQ  VASTVTDVKT360
GAVIAQIGGR  NQPTDVTFGF  NQAVQTDRDW  GSTMKPIVDY  GPAFENNIYT  STNDYVSDSP420
TTYPNGTPLK  NWDNTYFGSM  TVKSALALSR  NIPAVKTLIN  VGLDNSSKFV  DGLGINLNPL480
QYSNAISSNT  DTKNGGASSE  RMAAAYAAFS  NGGIYTKPYY  VSKVVFPDGR  TVEYKPVRSR540
AMQASTAYIM  TNILQSVLTL  SLSESVGSYA  AVPGLPAAGK  TGTSNYTDSE  MDQITEKYGS600
LPGMISPDEN  FVGYTPQYSM  AVWTGYSNRM  TPIYGTSTQI  ATKVFSSMMT  QLNPDPSAVA660
TWTAPEGVAQ  QGSALVKTDS  SGQTVTQSSA  NGG693

Predicted 3D structure by AlphaFold2 with pLDDT = 89.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(83-258)

MRYSKISTKS  KKNKQNKWAK  SGSAKSKWWT  AVKLFLIVFF  SLIILGLAAG  GAVFVYYAKD60
APALNLDKLE  STPSPKVYDS  KEHLVATLGA  EQRNLVKTDN  IPVMLVNAVT  SIEDHRFFNT120
RGIDPIRIAG  AFVNNLKGGS  LNGGSTLDMQ  LIKLSFFSTD  ESDQTLSVKV  QEAWMALKLD180
QKWTKEQIFT  AYVNKVNMAN  GYYGMGTAAQ  AYYGKDLTEL  SIAQLALLAG  MPQAPNTYNP240
YTNATSAKWR  RDMVIRSMRR  YNKITAEEEK  TALATPIDDG  LQPLQQSVTI  PSYADNFLKQ300
AIAQAKTLAG  NDILNEGVKI  YTILDTTAQQ  NLYNIVNSGN  YITYPDDTLQ  VASTVTDVKT360
GAVIAQIGGR  NQPTDVTFGF  NQAVQTDRDW  GSTMKPIVDY  GPAFENNIYT  STNDYVSDSP420
TTYPNGTPLK  NWDNTYFGSM  TVKSALALSR  NIPAVKTLIN  VGLDNSSKFV  DGLGINLNPL480
QYSNAISSNT  DTKNGGASSE  RMAAAYAAFS  NGGIYTKPYY  VSKVVFPDGR  TVEYKPVRSR540
AMQASTAYIM  TNILQSVLTL  SLSESVGSYA  AVPGLPAAGK  TGTSNYTDSE  MDQITEKYGS600
LPGMISPDEN  FVGYTPQYSM  AVWTGYSNRM  TPIYGTSTQI  ATKVFSSMMT  QLNPDPSAVA660
TWTAPEGVAQ  QGSALVKTDS  SGQTVTQSSA  NGG693

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help