CAZyme3D

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Entry ID

Information for CAZyme ID: BBB01859.1

Basic Information

GenBank IDBBB01859.1
FamilyGH55
Sequence Length585
UniProt IDA0A7U3UZT4(100,100)Download
Average pLDDT?94.50
CAZy50 ID19968
CAZy50 RepNo, AXI81283.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID659352
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces sp. SN-593

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPLVGGISTG  SAFAAQPEHR  GGPQHHGGAD  LGPNVLVFDP  SMGDAAIQAR  LDAVFATQQS60
NQFGTERYAL  AFKPGTYHVD  VNVGFYTHVL  GLGDSPDDVV  INGHVTVDAQ  WLDGNGTQNF120
WRAAENLSIA  PPDGLERWAV  AQAGPMRRVH  VKGDMTLWPS  PPGNQWSSGG  FLADSVVDGQ180
VESGSQQQWL  SRNDTFGSWT  GSNWNMVFVG  TQGAPAQSFP  TPPFTTVDRT  PTVREKPFLT240
VDRHGAYHVF  VPALRGDSTG  TTWAHGPARG  HSIPLSDFHV  ATPGESAADL  NRALAGGRHL300
LFTPGVYPLS  APLKVDRPGT  VVLGLGLATL  RATHGNSLVE  VADVGGATVA  GVLLEAASAH360
SPLLLRVGHG  RSRVRHAADP  TALFDVYARI  GGALSGGAGV  SVQVDSNDVI  CDNLWLWRAD420
HGLDGSVGWS  VNPADTGFLV  NGDHVTAYAL  AVEHYQKYEV  VWNGNHGRTY  FFQNEHPYDV480
PTQSAWVHGG  TNGYAAYKVG  DAVTDHHAWG  LGSYCFFDLE  ANIYTDRAYE  VPDTPGVVFT540
DLMTVCLNDA  AGGGILHCIN  SSGDPVENGF  GTYNMKRYAN  GVATV585

Predicted 3D structure by AlphaFold2 with pLDDT = 94.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH55(261-549)

MPLVGGISTG  SAFAAQPEHR  GGPQHHGGAD  LGPNVLVFDP  SMGDAAIQAR  LDAVFATQQS60
NQFGTERYAL  AFKPGTYHVD  VNVGFYTHVL  GLGDSPDDVV  INGHVTVDAQ  WLDGNGTQNF120
WRAAENLSIA  PPDGLERWAV  AQAGPMRRVH  VKGDMTLWPS  PPGNQWSSGG  FLADSVVDGQ180
VESGSQQQWL  SRNDTFGSWT  GSNWNMVFVG  TQGAPAQSFP  TPPFTTVDRT  PTVREKPFLT240
VDRHGAYHVF  VPALRGDSTG  TTWAHGPARG  HSIPLSDFHV  ATPGESAADL  NRALAGGRHL300
LFTPGVYPLS  APLKVDRPGT  VVLGLGLATL  RATHGNSLVE  VADVGGATVA  GVLLEAASAH360
SPLLLRVGHG  RSRVRHAADP  TALFDVYARI  GGALSGGAGV  SVQVDSNDVI  CDNLWLWRAD420
HGLDGSVGWS  VNPADTGFLV  NGDHVTAYAL  AVEHYQKYEV  VWNGNHGRTY  FFQNEHPYDV480
PTQSAWVHGG  TNGYAAYKVG  DAVTDHHAWG  LGSYCFFDLE  ANIYTDRAYE  VPDTPGVVFT540
DLMTVCLNDA  AGGGILHCIN  SSGDPVENGF  GTYNMKRYAN  GVATV585

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help