CAZyme3D

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Entry ID

Information for CAZyme ID: BAX94983.1

Basic Information

GenBank IDBAX94983.1
FamilyGT89
Sequence Length641
UniProt IDA0A1Z4EPQ7(100,100)Download
Average pLDDT?90.11
CAZy50 ID38741
CAZy50 RepNo, AEV72545.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID722731
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium shigaense

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLRRRPMVRR  PGRPFPYDRV  VRITLGISVA  LVVVLFGWGA  WQRRWIADDG  LIVLRTVRNL60
LAGNGPVFNQ  GERVEANTST  AWTYLMYLGS  WIGGPLRLEY  VALVLALVLS  LLGVALLMLG120
AGRLYAPSLR  GRKAIMLPAG  ALVYIALPPA  RDFATSGLES  GLTLAYLGLL  WWLMVRWSQP180
LRNRPDNDVF  TGALAFVAGV  SVLVRPELAV  MGGLALIMML  IAARTLRRRA  LIVAAGGFLP240
VAYQIFRMGY  YGLLVPGTAL  AKDAAGDKWS  QGMVYLANFN  APYALWAPVV  LLVPLGLLVM300
ATRRRPSFLR  PAEAPNYGRF  ARAVQSPPGA  VAFVLVSGLL  QALYWTRQGG  DFMHARVLLA360
PVFCLLAPVA  VIPVVLPDVK  DFQRESGALL  SAAAGVLWLG  IAGWSLWAAN  SPGMGDDATH420
VSYSGIVDER  RFYSQATGHA  HPLTAADYLD  YPRMAAVLTA  LDNTPEGALL  LPSGNYTQWD480
LVPMAQPAPG  GPPQKPQHAV  FFTNLGMLGM  NVGLDVRVID  QIGLANPLAQ  HTERLQHGRI540
GHDKNLFPDW  VIADGPWVKV  YPGVPGYLDV  NWIAQAVAAL  QCPETKAMLS  SVRAPMTIHR600
FVSNFLHSFE  FTGYRIDRVP  LYDLVRCGLP  VPEPSPPPPR  E641

Predicted 3D structure by AlphaFold2 with pLDDT = 90.11 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT89(24-630)

MLRRRPMVRR  PGRPFPYDRV  VRITLGISVA  LVVVLFGWGA  WQRRWIADDG  LIVLRTVRNL60
LAGNGPVFNQ  GERVEANTST  AWTYLMYLGS  WIGGPLRLEY  VALVLALVLS  LLGVALLMLG120
AGRLYAPSLR  GRKAIMLPAG  ALVYIALPPA  RDFATSGLES  GLTLAYLGLL  WWLMVRWSQP180
LRNRPDNDVF  TGALAFVAGV  SVLVRPELAV  MGGLALIMML  IAARTLRRRA  LIVAAGGFLP240
VAYQIFRMGY  YGLLVPGTAL  AKDAAGDKWS  QGMVYLANFN  APYALWAPVV  LLVPLGLLVM300
ATRRRPSFLR  PAEAPNYGRF  ARAVQSPPGA  VAFVLVSGLL  QALYWTRQGG  DFMHARVLLA360
PVFCLLAPVA  VIPVVLPDVK  DFQRESGALL  SAAAGVLWLG  IAGWSLWAAN  SPGMGDDATH420
VSYSGIVDER  RFYSQATGHA  HPLTAADYLD  YPRMAAVLTA  LDNTPEGALL  LPSGNYTQWD480
LVPMAQPAPG  GPPQKPQHAV  FFTNLGMLGM  NVGLDVRVID  QIGLANPLAQ  HTERLQHGRI540
GHDKNLFPDW  VIADGPWVKV  YPGVPGYLDV  NWIAQAVAAL  QCPETKAMLS  SVRAPMTIHR600
FVSNFLHSFE  FTGYRIDRVP  LYDLVRCGLP  VPEPSPPPPR  E641

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help