CAZyme3D

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Entry ID

Information for CAZyme ID: BAW29175.1

Basic Information

GenBank IDBAW29175.1
FamilyGT4
Sequence Length351
UniProt IDA0A1I6YEK6(100,100)Download
Average pLDDT?93.51
CAZy50 ID129669
CAZy50 RepNo, QIB90232.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID2210
KingdomArchaea
PhylumEuryarchaeota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina thermophila

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEIDYINGLK  TDEIFGMSKY  QSEIHRRLNN  VKLNRIEYPN  ISKVPGVNKL  VECFAYPFIV60
KKKIVRDNIK  HITRQDLAFL  LELVDLKKTI  VTCHDIIPIA  YYNTRNPIWK  LNAKGLRKAE120
KIITVSEFSK  KDISKYIKYP  EDQIEIIPPA  VDHNLYYPNR  NRAALKKYRI  EETEKVILYV180
GAEEPRKNIQ  LLINSFSKLK  NKIPQVKLLK  VGTPNYLGVR  EKLLEQIESL  NLQKDIIFTG240
YVSERELAEI  YNAVDLFVFP  SLYEGFGIPP  LEAMACGTPV  ITSNTSSLPE  VVGDAAIVVD300
PYDADKLVEE  MYQLLTDDGL  KKEMIRKGLK  RSKMFSWDES  ARKTLRVYKE  L351

Predicted 3D structure by AlphaFold2 with pLDDT = 93.51 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(169-324)

MEIDYINGLK  TDEIFGMSKY  QSEIHRRLNN  VKLNRIEYPN  ISKVPGVNKL  VECFAYPFIV60
KKKIVRDNIK  HITRQDLAFL  LELVDLKKTI  VTCHDIIPIA  YYNTRNPIWK  LNAKGLRKAE120
KIITVSEFSK  KDISKYIKYP  EDQIEIIPPA  VDHNLYYPNR  NRAALKKYRI  EETEKVILYV180
GAEEPRKNIQ  LLINSFSKLK  NKIPQVKLLK  VGTPNYLGVR  EKLLEQIESL  NLQKDIIFTG240
YVSERELAEI  YNAVDLFVFP  SLYEGFGIPP  LEAMACGTPV  ITSNTSSLPE  VVGDAAIVVD300
PYDADKLVEE  MYQLLTDDGL  KKEMIRKGLK  RSKMFSWDES  ARKTLRVYKE  L351

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help