CAZyme3D

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Entry ID

Information for CAZyme ID: BAV79901.1

Basic Information

GenBank IDBAV79901.1
FamilyCBM34, GH13_20
Sequence Length579
UniProt IDA0A1E1GAK0(100,100)Download
Average pLDDT?96.31
CAZy50 ID50542
CAZy50 RepNo, AJO16879.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1902136
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusStreptococcus
SpeciesStreptococcus sp. NPS 308

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MELTAIYHRP  ESEYAYLYKE  KIMHIRIRTK  KDDIESIHLH  YGDTFIFLED  HYEASKAMVK60
VTSDALFDYW  QVEVTVGYAR  LQYLFELKDK  QGQSIFYGDK  GCVENTLENL  HYEGNGFKIP120
YIHEIDACHV  PDWVAKTVWY  QIFPERFANG  NPEISPEGAL  AWDSSIKPKT  SDFFGGDLQG180
IIDHLDYLQD  LGVTGLYLCP  IFESPSNHKY  NTTDYFEIDH  HFGDKETFRK  LVEEAHQRDM240
KIMLDAVFNH  IGDQSPQWQD  VLKHGEKSEY  KDWFHVQEFP  VSKNKLGNPR  KLPYHTFAFA300
SYMPKLNTAN  PQVRDYLLKV  ATYWIEELGI  DAWRLDVANE  VDHQFWRDFR  KAVLAKKPDL360
YILGEVWHTS  QPWLNGDEFH  AVMNYPLSDS  IKDYFLRGTK  KTPQFINEIN  SQSMYYRQQI420
SEVMFNLLDS  HDTERILATA  KGDAQLVKSA  LACLFLQRGT  PCFYYGTELE  LDGGPDPDCR480
RVMPWERVSD  SNEMLNFMKK  LIQLRKEVSG  IIQHGTYSLK  EIKPDVLALE  WDYDGQKVQA540
IFNQSSENYL  VDRDSVVLAS  HCQELGLQLA  ILPKGFIIR579

Predicted 3D structure by AlphaFold2 with pLDDT = 96.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM34(6-126)+GH13_20(176-477)

MELTAIYHRP  ESEYAYLYKE  KIMHIRIRTK  KDDIESIHLH  YGDTFIFLED  HYEASKAMVK60
VTSDALFDYW  QVEVTVGYAR  LQYLFELKDK  QGQSIFYGDK  GCVENTLENL  HYEGNGFKIP120
YIHEIDACHV  PDWVAKTVWY  QIFPERFANG  NPEISPEGAL  AWDSSIKPKT  SDFFGGDLQG180
IIDHLDYLQD  LGVTGLYLCP  IFESPSNHKY  NTTDYFEIDH  HFGDKETFRK  LVEEAHQRDM240
KIMLDAVFNH  IGDQSPQWQD  VLKHGEKSEY  KDWFHVQEFP  VSKNKLGNPR  KLPYHTFAFA300
SYMPKLNTAN  PQVRDYLLKV  ATYWIEELGI  DAWRLDVANE  VDHQFWRDFR  KAVLAKKPDL360
YILGEVWHTS  QPWLNGDEFH  AVMNYPLSDS  IKDYFLRGTK  KTPQFINEIN  SQSMYYRQQI420
SEVMFNLLDS  HDTERILATA  KGDAQLVKSA  LACLFLQRGT  PCFYYGTELE  LDGGPDPDCR480
RVMPWERVSD  SNEMLNFMKK  LIQLRKEVSG  IIQHGTYSLK  EIKPDVLALE  WDYDGQKVQA540
IFNQSSENYL  VDRDSVVLAS  HCQELGLQLA  ILPKGFIIR579

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help