CAZyme3D

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Entry ID

Information for CAZyme ID: BAU90519.1

Basic Information

GenBank IDBAU90519.1
FamilyGT4
Sequence Length416
UniProt IDA0A160PC76(100,100)Download
Average pLDDT?89.35
CAZy50 ID76018
CAZy50 RepNo, ACA17368.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID223967
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum populi
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A160PC76.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTAPIAPSLT  ALAAHDRAGS  PVVDLRTRGG  AAERHRILHV  FRAPVGGLFR  HVVDLTRLQA60
EAGHAVGLVC  DASTGGERAE  RALAELAPHL  ALGVTRIPMR  RNPHASDLAA  LRAVRKQALA120
VGADVLHGHG  AKGGVFARLA  PLGRAGRGVI  RAYTPHGGSY  NYRPGTPLHR  LYMAAEQMMA180
RATDLFLFES  EYVASRHAAY  AGGSPRLERI  VHNGIGEAEF  LPVGTSEDPF  DLVYVGELRE240
AKGLPVLLRA  LARIRGRGRN  LRLLMVGSGP  DMESLAAMAE  NLGLRDAIAF  EPPQAIRPVL300
GRGRVMVVPS  LAESLPYVVL  EAAAAAQPLV  ATNVGGIPEI  FGSLSGDLVP  PGDCEALGRA360
IVRILDEEPA  LREGRARALS  DSLRTRFSMN  RMATDVLCGY  AAAFRAKRVA  AASAAA416

Predicted 3D structure by AlphaFold2 with pLDDT = 89.35 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(230-370)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help