CAZyme3D

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Entry ID

Information for CAZyme ID: BAU23343.1

Basic Information

GenBank IDBAU23343.1
FamilyGH171
Sequence Length395
UniProt IDA0A0U5AY07(100,100)Download
Average pLDDT?94.64
CAZy50 ID101597
CAZy50 RepNo, QER41244.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1653476
KingdomBacteria
PhylumThermodesulfobacteriota
ClassThermodesulfobacteria
OrderThermodesulfobacteriales
FamilyThermodesulfobacteriaceae
GenusCaldimicrobium
SpeciesCaldimicrobium thiodismutans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKEKTFKLGL  EVFFAKDLYK  NYKKAKIALL  THQAALDRTF  RLSFELFYRV  FGERLTFIFS60
PQHGLFSEKQ  ANMIGSPDER  EPFWGIPVIS  LYGPRLRPDP  DRLKEIDVIF  VDLQDVGCRV120
YTYIWTLFLL  LESTFYAGRE  VVILDRPNPL  ASIVEGPVLE  EEYYSFVGLD  CLPQRHGLTL180
GELALLFQRR  HFSTLDLKVI  SMEGYPRNSL  FPALERPWIF  PSPNLPTFES  ALVYPGLVFF240
EGTNLSEGRG  TTLPFLIFGA  PYLKIKMLRD  FLEEVFPETN  WGVKLRPIAF  EPTFDKWKGM300
RCYGFQIHLT  DYLKFRPVEF  ALRLLKLIKD  THPDFEFLDI  PYEFEERLSP  IEILIGNKRV360
LQWLKGNPEN  PIETLLKARV  DHFLKEVKTI  QLYKD395

Predicted 3D structure by AlphaFold2 with pLDDT = 94.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(27-393)

MKEKTFKLGL  EVFFAKDLYK  NYKKAKIALL  THQAALDRTF  RLSFELFYRV  FGERLTFIFS60
PQHGLFSEKQ  ANMIGSPDER  EPFWGIPVIS  LYGPRLRPDP  DRLKEIDVIF  VDLQDVGCRV120
YTYIWTLFLL  LESTFYAGRE  VVILDRPNPL  ASIVEGPVLE  EEYYSFVGLD  CLPQRHGLTL180
GELALLFQRR  HFSTLDLKVI  SMEGYPRNSL  FPALERPWIF  PSPNLPTFES  ALVYPGLVFF240
EGTNLSEGRG  TTLPFLIFGA  PYLKIKMLRD  FLEEVFPETN  WGVKLRPIAF  EPTFDKWKGM300
RCYGFQIHLT  DYLKFRPVEF  ALRLLKLIKD  THPDFEFLDI  PYEFEERLSP  IEILIGNKRV360
LQWLKGNPEN  PIETLLKARV  DHFLKEVKTI  QLYKD395

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help