CAZyme3D

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Entry ID

Information for CAZyme ID: BAU08918.1

Basic Information

GenBank IDBAU08918.1
FamilyGT35
Sequence Length881
UniProt IDA0A0S3TV74(100,100)Download
Average pLDDT?91.87
CAZy50 ID17624
CAZy50 RepNo, ASC69086.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1752063
KingdomBacteria
PhylumCyanobacteriota
ClassCyanophyceae
OrderNostocales
FamilyHapalosiphonaceae
GenusFischerella
SpeciesFischerella sp. NIES-3754

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQPIRTFNVS  PSLPARLEPL  RKLAYNLLWD  WNVETKDLFR  RLDPDLWESS  RHNPVLMLGT60
ISQARLLEVV  EDEGFLAQMD  RAALQIEDYL  KERTWYEKTR  DKGSGTKNWG  QGSNSSPSSF120
PNSQSPIPNT  RSPECYAYFS  AEFGLVDCLP  IYSGGLGVLA  GDHLKSASDL  GLPLVGVGLL180
YQQGYFAQYL  NADGWQQERY  PINDFYNMPL  HLERNPDGSE  LRITVDYPGR  TVYARVWRVQ240
VGRVPLYMLD  TNIEPNNPYD  HDITDQLYGG  DIDMRIHQEI  MLGIGGVRML  KALGYNVTAY300
HMNEGHAAFS  ALERIRILIQ  EQGLSYIEAR  QVVASTNIFT  THTPVPAGID  LFPPDKVLHY360
LGHYAEIFGL  SKDEFLALGR  ESTGDLSSPF  SMAVLALKMA  TFSNGVAQLH  GTVSRQMFKG420
LWTGVPIQEV  PITAITNGVH  ARSCVAKSTQ  ELYDRYLGPN  WSSAPVDHPL  WDRMNAIPDE480
ELWRNHERCR  LDMILYVRER  LVKHLRDRGA  SPSEIAQAQE  VLDPYVLTIG  FARRFATYKR540
ATLWMRDIER  IKRILLGNKD  RKVQFVIAGK  AHPKDIPGKE  LIREINHFIR  ENNLEKQIVF600
VPNYDIYIAR  LMVAGCDVWL  NTPRRPREAS  GTSGMKAAMN  GLPNLSVLDG  WWDEADYVRT660
GWAIGHGEIY  DDPNYQDEVE  ANALYDILEK  EVVALFYHRD  ADGLPRRWVA  KMKDAIRLNC720
PLFNTARMVR  EYAQRAYFPA  SDRYHILTGD  NYAPAKELAA  WKLNLGEHWY  NITIKDIDVS780
VGPDIEVNQT  VTVKAKVDLA  TLTNNDVQVE  LYQGAVDASG  EIVNGVPLVM  EYQGEDDQGL840
SIYKADVLYT  TSGLQGLSLR  VLPKHKYLSS  PYEPRLILWA  Q881

Predicted 3D structure by AlphaFold2 with pLDDT = 91.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT35(298-655)

MQPIRTFNVS  PSLPARLEPL  RKLAYNLLWD  WNVETKDLFR  RLDPDLWESS  RHNPVLMLGT60
ISQARLLEVV  EDEGFLAQMD  RAALQIEDYL  KERTWYEKTR  DKGSGTKNWG  QGSNSSPSSF120
PNSQSPIPNT  RSPECYAYFS  AEFGLVDCLP  IYSGGLGVLA  GDHLKSASDL  GLPLVGVGLL180
YQQGYFAQYL  NADGWQQERY  PINDFYNMPL  HLERNPDGSE  LRITVDYPGR  TVYARVWRVQ240
VGRVPLYMLD  TNIEPNNPYD  HDITDQLYGG  DIDMRIHQEI  MLGIGGVRML  KALGYNVTAY300
HMNEGHAAFS  ALERIRILIQ  EQGLSYIEAR  QVVASTNIFT  THTPVPAGID  LFPPDKVLHY360
LGHYAEIFGL  SKDEFLALGR  ESTGDLSSPF  SMAVLALKMA  TFSNGVAQLH  GTVSRQMFKG420
LWTGVPIQEV  PITAITNGVH  ARSCVAKSTQ  ELYDRYLGPN  WSSAPVDHPL  WDRMNAIPDE480
ELWRNHERCR  LDMILYVRER  LVKHLRDRGA  SPSEIAQAQE  VLDPYVLTIG  FARRFATYKR540
ATLWMRDIER  IKRILLGNKD  RKVQFVIAGK  AHPKDIPGKE  LIREINHFIR  ENNLEKQIVF600
VPNYDIYIAR  LMVAGCDVWL  NTPRRPREAS  GTSGMKAAMN  GLPNLSVLDG  WWDEADYVRT660
GWAIGHGEIY  DDPNYQDEVE  ANALYDILEK  EVVALFYHRD  ADGLPRRWVA  KMKDAIRLNC720
PLFNTARMVR  EYAQRAYFPA  SDRYHILTGD  NYAPAKELAA  WKLNLGEHWY  NITIKDIDVS780
VGPDIEVNQT  VTVKAKVDLA  TLTNNDVQVE  LYQGAVDASG  EIVNGVPLVM  EYQGEDDQGL840
SIYKADVLYT  TSGLQGLSLR  VLPKHKYLSS  PYEPRLILWA  Q881

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help