CAZyme3D

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Entry ID

Information for CAZyme ID: BAT09715.1

Basic Information

GenBank IDBAT09715.1
FamilyGT37
Sequence Length232
UniProt IDA0A0P0XRL8(100,100)Download
Average pLDDT?57.52
CAZy50 ID51266
CAZy50 RepNo, BAD17112.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLQQVGVIPV  LPEPGPTTIS  APRHTAADAR  GAPETESYNR  AVQRLKDGSG  KGSATEADAR60
CGCSRATSRW  CRSYANFSAD  SAESYGNMMK  NKVLGTDGSD  GDMPAAQMPA  FAYLHLNHDY120
GDDDKMFFCD  DDQRLVMRTD  TYIVPSLFLV  TTFQDELDAL  FPERGAVFHY  LGRYLFPQAN180
HTAVLQRVPR  AGVAAAGRRP  GARLRPPARR  SRRTSSSSSS  SRARGRRSCY  RR232

Predicted 3D structure by AlphaFold2 with pLDDT = 57.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MLQQVGVIPV  LPEPGPTTIS  APRHTAADAR  GAPETESYNR  AVQRLKDGSG  KGSATEADAR60
CGCSRATSRW  CRSYANFSAD  SAESYGNMMK  NKVLGTDGSD  GDMPAAQMPA  FAYLHLNHDY120
GDDDKMFFCD  DDQRLVMRTD  TYIVPSLFLV  TTFQDELDAL  FPERGAVFHY  LGRYLFPQAN180
HTAVLQRVPR  AGVAAAGRRP  GARLRPPARR  SRRTSSSSSS  SRARGRRSCY  RR232

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help