CAZyme3D

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Entry ID

Information for CAZyme ID: BAS98686.1

Basic Information

GenBank IDBAS98686.1
FamilyGT92
Sequence Length489
UniProt IDQ69TZ4(100,100)Download
Average pLDDT?85.87
CAZy50 ID49214
CAZy50 RepNo, BAJ91412.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKDAAAGGG  GGGGIAAGPA  PALLCFDLKP  FLAALTVLTL  AVRTVASSGN  ASVSSDPGGP60
PASLPEVGNK  KPVAAAAAAD  PNRREFRAVG  SAAALFVQMG  AYRGGPYTFA  VIGLASKPTH120
VYGKPWFRCE  WVPNANGSAA  AAAARPMRAA  NTYHMLPDWG  YGRVYTVVVV  NCTFARVPNA180
DNAGGKLVLN  AYYGASPARY  ERIVAMEEAP  GAYDAAEFRP  PHRYDYLYCG  SSLYGNLSAA240
RVREWMAYHA  RFFGLRSHFV  FHDAGGVSPA  VRAALEPWVR  AGRATLQDVR  AQAEYDGWYY300
NQFLVVNDCL  HRYRHAARWT  FFFDVDEYIF  LPDGRSLEAV  LAELEPYTQF  TIEQNPMSSR360
LCARNPDEPE  TDYSNEWGFE  KLVFRNSITG  VRRDRKYAIQ  AKNAYATGVH  MSENVIGNTT420
HKTEHLIRYY  HYHNTINVIG  EVCREFVPIP  PNGGLIWSEK  TPWYYDDSMK  RIADTVREFE480
RKTIGDVRV489

Predicted 3D structure by AlphaFold2 with pLDDT = 85.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT92(225-436)

MRKDAAAGGG  GGGGIAAGPA  PALLCFDLKP  FLAALTVLTL  AVRTVASSGN  ASVSSDPGGP60
PASLPEVGNK  KPVAAAAAAD  PNRREFRAVG  SAAALFVQMG  AYRGGPYTFA  VIGLASKPTH120
VYGKPWFRCE  WVPNANGSAA  AAAARPMRAA  NTYHMLPDWG  YGRVYTVVVV  NCTFARVPNA180
DNAGGKLVLN  AYYGASPARY  ERIVAMEEAP  GAYDAAEFRP  PHRYDYLYCG  SSLYGNLSAA240
RVREWMAYHA  RFFGLRSHFV  FHDAGGVSPA  VRAALEPWVR  AGRATLQDVR  AQAEYDGWYY300
NQFLVVNDCL  HRYRHAARWT  FFFDVDEYIF  LPDGRSLEAV  LAELEPYTQF  TIEQNPMSSR360
LCARNPDEPE  TDYSNEWGFE  KLVFRNSITG  VRRDRKYAIQ  AKNAYATGVH  MSENVIGNTT420
HKTEHLIRYY  HYHNTINVIG  EVCREFVPIP  PNGGLIWSEK  TPWYYDDSMK  RIADTVREFE480
RKTIGDVRV489

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help