CAZyme3D

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Entry ID

Information for CAZyme ID: BAS96747.1

Basic Information

GenBank IDBAS96747.1
FamilyGT37
Sequence Length492
UniProt IDA0A0P0WUC7(100,100)Download
Average pLDDT?85.37
CAZy50 ID52938
CAZy50 RepNo, BAT04959.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID39947
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MATRGKKLGG  VAGGGGAAVR  VVGVVCVMAV  PLFALLVLGG  WASASTKLRD  YEARHRRCGP60
GTPGYAKSDE  QLRSGHSSEV  MECNYLVGLP  YNGLGNRMLS  LVASFLYALL  TDRVFLVHFP120
DDFADHFCEP  FPGGEGETAT  TWVLPPDFPV  ADLWRLGVHS  NQSYGNLLAA  KKITGDPARE180
TPVSVPPYVY  LHLAHDLRGD  DERFYCNDDQ  LVLAKVNWLL  LQSDLYFVPS  LYAIPEFQDE240
LRWMFPEKES  VTHLLARYLL  HPSNSVWGMV  MRYHHAYLAP  AAEMIGVQIR  MFSWASIPVD300
DMYKQVMACS  SQERILPDTD  GGDAPAPART  NTSGGGATTA  ILVASLQVEY  YERLKGKYYE360
HAATASGGGR  RWVGVFQPSH  EEKQEMGKRA  HNQKALAEIY  LLSFADVLLT  SGMSTFGYMS420
SALAGLRPAM  LLTAFNHKVP  RTPCVRAVSM  EPCFHKPPPA  AATCQGKLAV  SENVTRHIKR480
CEDLAGGIKL  FD492

Predicted 3D structure by AlphaFold2 with pLDDT = 85.37 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT37(46-459)

MATRGKKLGG  VAGGGGAAVR  VVGVVCVMAV  PLFALLVLGG  WASASTKLRD  YEARHRRCGP60
GTPGYAKSDE  QLRSGHSSEV  MECNYLVGLP  YNGLGNRMLS  LVASFLYALL  TDRVFLVHFP120
DDFADHFCEP  FPGGEGETAT  TWVLPPDFPV  ADLWRLGVHS  NQSYGNLLAA  KKITGDPARE180
TPVSVPPYVY  LHLAHDLRGD  DERFYCNDDQ  LVLAKVNWLL  LQSDLYFVPS  LYAIPEFQDE240
LRWMFPEKES  VTHLLARYLL  HPSNSVWGMV  MRYHHAYLAP  AAEMIGVQIR  MFSWASIPVD300
DMYKQVMACS  SQERILPDTD  GGDAPAPART  NTSGGGATTA  ILVASLQVEY  YERLKGKYYE360
HAATASGGGR  RWVGVFQPSH  EEKQEMGKRA  HNQKALAEIY  LLSFADVLLT  SGMSTFGYMS420
SALAGLRPAM  LLTAFNHKVP  RTPCVRAVSM  EPCFHKPPPA  AATCQGKLAV  SENVTRHIKR480
CEDLAGGIKL  FD492

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help